scType rewritten in python
☆25Nov 7, 2024Updated last year
Alternatives and similar repositories for sc-type-py
Users that are interested in sc-type-py are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆12Jul 11, 2024Updated 2 years ago
- Codes used in LISTA project.☆15Apr 17, 2024Updated 2 years ago
- LARIS enables accurate and efficient ligand and receptor interaction analysis in spatial transcriptomics☆17Updated this week
- ☆13Jun 11, 2023Updated 3 years ago
- ☆16May 25, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆18Dec 18, 2023Updated 2 years ago
- ☆16May 26, 2022Updated 4 years ago
- ☆21Apr 23, 2024Updated 2 years ago
- ☆13Jun 6, 2024Updated 2 years ago
- ☆14Mar 28, 2025Updated last year
- ☆36Oct 22, 2025Updated 10 months ago
- Inference of TCR motifs☆33Jun 17, 2025Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Jul 13, 2026Updated last month
- Python bindings for SingleR☆16Aug 14, 2026Updated 3 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆13Mar 29, 2024Updated 2 years ago
- Identification of clone-specific and cancer-selective multi-targeting therapeutic options based on single-cell transcriptomic profiles of…☆25Feb 20, 2025Updated last year
- Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images☆27Updated this week
- Cell level integrated analysis of tissue histology and spatial transcriptomics☆32Oct 6, 2025Updated 10 months ago
- ☆67Aug 18, 2026Updated 2 weeks ago
- Code for major analyses in "Spatially resolved multi-omics of human metabolic dysfunction-associated steatotic liver disease" paper by Zi…☆15Nov 25, 2025Updated 9 months ago
- CellRank 2's reproducibility repository.☆16Sep 4, 2024Updated last year
- Join subcellular Visium HD bins into cells☆143May 8, 2026Updated 3 months ago
- ☆40Nov 17, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆90Jul 4, 2026Updated 2 months ago
- ☆22Jul 22, 2025Updated last year
- ☆17Apr 15, 2025Updated last year
- ☆22Jan 6, 2024Updated 2 years ago
- An R package to write Datalog queries and interact with a Datomic database☆11Aug 12, 2021Updated 5 years ago
- ☆28Jan 25, 2022Updated 4 years ago
- ☆46Oct 16, 2024Updated last year
- Interoperability between SpatialData and the Xenium Explorer☆26Jul 31, 2024Updated 2 years ago
- An automated workflow to create disease-specific Knowledge Graphs☆25Mar 24, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆24Jan 10, 2025Updated last year
- SPatial INtegration of spatially resolved transcriptomics datasets☆19Mar 14, 2025Updated last year
- ☆17Jul 27, 2026Updated last month
- ☆13Aug 11, 2023Updated 3 years ago
- tutorials for spateo package☆21Dec 25, 2024Updated last year
- ☆11Sep 11, 2020Updated 5 years ago
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆20Dec 5, 2024Updated last year