kris-nader / sc-type-py
scType rewritten in python
☆16Updated 5 months ago
Alternatives and similar repositories for sc-type-py:
Users that are interested in sc-type-py are comparing it to the libraries listed below
- Cell-type Relationship Analysis Workflow Done Across Distances☆31Updated last month
- Python package for Probe set selection for targeted spatial transcriptomics.☆36Updated 4 months ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆48Updated 2 months ago
- iterative clustering pipeline of big single cell datasets.☆29Updated 2 months ago
- Stitch multiple Visium slides together☆15Updated last year
- CAST package☆34Updated 5 months ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆30Updated last week
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆40Updated 3 months ago
- Pipeline for designing custom probes against human genes☆16Updated 5 months ago
- Tools for analyzing Slide-seq data☆31Updated last year
- ☆42Updated last week
- Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity☆26Updated 9 months ago
- a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.☆53Updated 3 weeks ago
- cell type specific, trait-associated gene regulation☆22Updated 3 weeks ago
- Code for the "Spatial genomics maps the structure, nature and evolution of cancer clones" paper☆25Updated 2 years ago
- Port of symphony algorithm of single-cell reference atlas mapping to Python☆28Updated 4 months ago
- A toolset for analysis and visualisation of Spatial Transcriptomics datasets.☆18Updated 3 years ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆25Updated 3 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆60Updated 10 months ago
- ☆36Updated 6 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆13Updated 3 years ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated last month
- Identification of spatial homogeneous regions☆20Updated 3 months ago
- ☆24Updated last month
- Probabilistic cell segmentation for in situ spatial transcriptomics☆68Updated this week
- A unified interface to spatial transcriptomics deconvolution tools☆41Updated last week
- ☆47Updated 3 weeks ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 4 months ago
- A modular tool for proportion analysis in single-cell sequencing data☆18Updated 2 months ago