scType rewritten in python
☆26Nov 7, 2024Updated last year
Alternatives and similar repositories for sc-type-py
Users that are interested in sc-type-py are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- scType goes spatial: ScType enables fast and accurate cell type identification from spatial transcriptomics data☆12Jul 11, 2024Updated 2 years ago
- Codes used in LISTA project.☆14Apr 17, 2024Updated 2 years ago
- LARIS enables accurate and efficient ligand and receptor interaction analysis in spatial transcriptomics☆17Sep 16, 2026Updated last week
- ☆14Jun 11, 2023Updated 3 years ago
- ☆16May 25, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆18Dec 18, 2023Updated 2 years ago
- ☆16May 26, 2022Updated 4 years ago
- ☆21Apr 23, 2024Updated 2 years ago
- ☆13Jun 6, 2024Updated 2 years ago
- ☆14Mar 28, 2025Updated last year
- ☆36Oct 22, 2025Updated 11 months ago
- Inference of TCR motifs☆33Jun 17, 2025Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆17Jul 13, 2026Updated 2 months ago
- Python bindings for SingleR☆16Aug 14, 2026Updated last month
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆13Mar 29, 2024Updated 2 years ago
- Identification of clone-specific and cancer-selective multi-targeting therapeutic options based on single-cell transcriptomic profiles of…☆25Feb 20, 2025Updated last year
- Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images☆27Aug 29, 2026Updated 3 weeks ago
- Cell level integrated analysis of tissue histology and spatial transcriptomics☆32Oct 6, 2025Updated 11 months ago
- ☆67Sep 9, 2026Updated 2 weeks ago
- Code for major analyses in "Spatially resolved multi-omics of human metabolic dysfunction-associated steatotic liver disease" paper by Zi…☆16Nov 25, 2025Updated 9 months ago
- Join subcellular Visium HD bins into cells☆143Sep 14, 2026Updated last week
- ☆40Nov 17, 2022Updated 3 years ago
- BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …☆97Jul 4, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆22Jul 22, 2025Updated last year
- ☆17Apr 15, 2025Updated last year
- ☆22Jan 6, 2024Updated 2 years ago
- An R package to write Datalog queries and interact with a Datomic database☆11Aug 12, 2021Updated 5 years ago
- ☆28Jan 25, 2022Updated 4 years ago
- CellRank 2's reproducibility repository.☆17Sep 4, 2024Updated 2 years ago
- ☆46Oct 16, 2024Updated last year
- Interoperability between SpatialData and the Xenium Explorer☆27Jul 31, 2024Updated 2 years ago
- An automated workflow to create disease-specific Knowledge Graphs☆25Mar 24, 2026Updated 6 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆24Jan 10, 2025Updated last year
- SPatial INtegration of spatially resolved transcriptomics datasets☆19Mar 14, 2025Updated last year
- ☆17Jul 27, 2026Updated last month
- ☆13Aug 11, 2023Updated 3 years ago
- tutorials for spateo package☆21Dec 25, 2024Updated last year
- ☆11Sep 11, 2020Updated 6 years ago
- Probabilistic factor models for spatially correlated data. Includes nonnegative and real-valued versions.☆20Dec 5, 2024Updated last year