Bayer-Group / celleniumLinks
Cellenium is a FAIR and scalable interactive visual analytics app for scRNA-Seq data (single-cell RNA sequencing).
☆28Updated 2 years ago
Alternatives and similar repositories for cellenium
Users that are interested in cellenium are comparing it to the libraries listed below
Sorting:
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆34Updated 10 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆59Updated 8 months ago
- Code and documentation for the curation of cellxgene datasets☆52Updated last week
- Multi-modal single cell analysis pipelines☆62Updated last month
- Using BCR and expression for sequence embedding☆25Updated last month
- A fast dataloader for bigwig files made for machine learning☆29Updated last month
- Fit generalized linear models in python.☆28Updated 2 years ago
- ☆44Updated last year
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- ☆37Updated 2 weeks ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆26Updated 3 years ago
- ☆19Updated last year
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆73Updated last week
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆62Updated last week
- ☆62Updated 8 months ago
- Collection of tools to retrieve siRNA (small interfering RNA) candidate sequences targeting your gene of interest from popular siRNA desi…☆16Updated 3 years ago
- VDJ Clonotyping & Analysis Tools☆50Updated 11 months ago
- Single Cell Consensus Clustering with Speed☆20Updated 3 years ago
- ☆27Updated 8 months ago
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆67Updated 2 months ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆69Updated last year
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆57Updated last year
- CellDepot: A unified repository for scRNA-seq data and visual exploration. J Mol Biol. 2021 Dec 28:167425. doi: 10.1016/j.jmb.2021.167425…☆24Updated 2 years ago
- ☆62Updated last year
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆65Updated last month
- Molecular interactions inference from single-cell multi-omics data☆30Updated 3 weeks ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆64Updated 5 months ago
- CZ CELLxGENE Discover Census☆117Updated 3 weeks ago
- bioinformatics plotting and tools☆60Updated last year
- CAusal Reasoning for Network Identification with integer VALue programming in R☆61Updated 2 years ago