Alternatives and similar repositories for cellenium

Users that are interested in cellenium are comparing it to the libraries listed below

• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆55Updated 6 months ago
• Novartis / DRUG-seq
  DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline
  ☆33Updated 8 months ago
• BorchLab / Ibex
  Using BCR and expression for sequence embedding
  ☆25Updated 2 weeks ago
• MaayanLab / archs4py
  Python package to load and query ARCHS4 data
  ☆24Updated 3 months ago
• cellatlas / human
  ☆44Updated last year
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 3 years ago
• MaayanLab / archs4
  ARCHS4 RNA-seq processing scripts and web server pages.
  ☆60Updated 4 years ago
• Center-for-Health-Data-Science / multiDGD
  ☆26Updated 6 months ago
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• czi-ai / transcriptformer
  ☆92Updated 2 weeks ago
• pfizer-opensource / bigwig-loader
  A fast dataloader for bigwig files made for machine learning
  ☆28Updated last week
• theislab / vevo_Tahoe_100m_analysis
  ☆32Updated 6 months ago
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆49Updated 2 weeks ago
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆25Updated 3 years ago
• RGLab / FAUST
  Full annotation using shape-constrained trees
  ☆27Updated 2 years ago
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆61Updated last month
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆54Updated 3 weeks ago
• pepkit / geofetch
  Builds a PEP from SRA or GEO accessions
  ☆53Updated 2 weeks ago
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆56Updated last year
• hemberg-lab / sc3s
  Single Cell Consensus Clustering with Speed
  ☆20Updated 2 years ago
• OSU-BMBL / ssread
  A single-cell and spatial RNA-seq database for Alzheimer’s Disease
  ☆26Updated last year
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆53Updated this week
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆17Updated 2 years ago
• Teichlab / celltypist_wiki
  Materials and scripts for building cell type encyclopedia table
  ☆20Updated last month
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• lilab-bcb / harmony-pytorch
  ☆58Updated 6 months ago
• keyes-timothy / tidytof
  An R package for analyzing high-dimensional cytometry data using the tidyverse.
  ☆19Updated last year
• fabilab / northstar
  Single cell type annotation guided by cell atlases, with freedom to be queer
  ☆25Updated 3 years ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• HCA-integration / scAtlasTb
  Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases
  ☆41Updated last week