Alternatives and similar repositories for cellenium

Users that are interested in cellenium are comparing it to the libraries listed below

• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆52Updated 4 months ago
• DendrouLab / panpipes
  Multi-modal single cell analysis pipelines
  ☆59Updated last week
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆50Updated this week
• theislab / batchglm
  Fit generalized linear models in python.
  ☆28Updated 2 years ago
• Novartis / DRUG-seq
  DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline
  ☆33Updated 6 months ago
• cellatlas / human
  ☆44Updated 11 months ago
• BorchLab / Ibex
  Using BCR and expression for sequence embedding
  ☆25Updated last week
• bioFAM / mofapy2
  Multi-omics factor analysis v2
  ☆49Updated 11 months ago
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆46Updated last month
• DanHanh / scLinear
  ☆19Updated last year
• hemberg-lab / sc3s
  Single Cell Consensus Clustering with Speed
  ☆20Updated 2 years ago
• pfizer-opensource / bigwig-loader
  A fast dataloader for bigwig files made for machine learning
  ☆28Updated 5 months ago
• czi-ai / transcriptformer
  ☆86Updated last month
• theislab / vevo_Tahoe_100m_analysis
  ☆30Updated 5 months ago
• HCA-integration / scAtlasTb
  Pipeline framework for iteratively and reproducibly building and evaluating single cell atlases
  ☆39Updated this week
• Genentech / decima
  Decima is a Python library to train sequence models on single-cell RNA-seq data.
  ☆47Updated this week
• rajewsky-lab / spacemake
  ☆45Updated last week
• Novartis / cellxgene-gateway
  Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…
  ☆66Updated last year
• NygenAnalytics / CyteType
  Multi-agent driven cell type annotation for single-cell RNA-Seq data stored in Anndata format
  ☆46Updated 3 weeks ago
• Center-for-Health-Data-Science / multiDGD
  ☆26Updated 4 months ago
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆27Updated 2 weeks ago
• lilab-bcb / harmony-pytorch
  ☆56Updated 4 months ago
• theislab / scTab
  ☆61Updated last year
• chanzuckerberg / cellxgene-census
  CZ CELLxGENE Discover Census
  ☆109Updated last week
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆55Updated last year
• Teichlab / celltypist_wiki
  Materials and scripts for building cell type encyclopedia table
  ☆20Updated last week
• immunitastx / monkeybread
  Analyzing cellular niches in spatial transcriptomics data
  ☆30Updated 10 months ago
• scverse / mudata
  Multimodal Data (.h5mu) implementation for Python
  ☆97Updated 4 months ago
• SingleRust / SingleRust
  Single Rust: Pioneering single-cell analysis with Rust's concurrency for scalable, high-throughput pipelines. 🧬🚀
  ☆76Updated last week
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆89Updated 11 months ago