Quick pre-QC knee plots for barcode based scRNAseq data
☆12Dec 8, 2018Updated 7 years ago
Alternatives and similar repositories for qnee
Users that are interested in qnee are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆43Jun 16, 2025Updated 10 months ago
- Python bindings for SingleR☆15Jan 6, 2026Updated 3 months ago
- scover☆24Nov 3, 2023Updated 2 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆36Jan 4, 2022Updated 4 years ago
- A method for analyzing scATAC-seq experiments.☆33Jun 20, 2025Updated 9 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challe…☆87Mar 16, 2026Updated last month
- a package for streamlined multidomain data integration and translation based on cross-modal autoencoders architectures☆29Jul 5, 2023Updated 2 years ago
- A collection of resources and knowledge for analysis of scATAC+scRNA multi omics data☆10Sep 16, 2022Updated 3 years ago
- Beta-Poisson model for single-cell RNA-seq data analyses☆17Feb 8, 2019Updated 7 years ago
- Identify major cellular signals in bulk transcriptomes☆11Jun 1, 2022Updated 3 years ago
- Mean Alterations Using Discrete Expression☆14Apr 9, 2024Updated 2 years ago
- Documentations and Tutorials of Gosling.js☆12Sep 13, 2021Updated 4 years ago
- Interspecies Point Projection - A tool for comparative genomics beyond alignable sequence☆26Feb 9, 2026Updated 2 months ago
- DistMap☆13Nov 23, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A command-line tool to mitigate homology-based data leakage in sequence-to-expression models☆19Mar 29, 2026Updated 2 weeks ago
- This repository contains all analysis scripts used to explore single cell datasets for: Jardine and Webb et al., 2021, "Blood and immune …☆13May 4, 2022Updated 3 years ago
- Sanger Cellular Genetics single-cell ATAC-seq pipeline.☆13Aug 25, 2023Updated 2 years ago
- scVI extension for unspliced RNA☆15May 18, 2025Updated 10 months ago
- ☆28Oct 2, 2023Updated 2 years ago
- Scripts used in the paper "Control of cell state transitions" by Rukhlenko et al.☆15May 4, 2022Updated 3 years ago
- A lightweight reimplementation of some of the algorithms in the MEME suite in Python.☆32Mar 17, 2026Updated 3 weeks ago
- Modelling insertion efficiency for Prime Insertion Experiments☆13Apr 1, 2024Updated 2 years ago
- Learning cell communication from spatial graphs of cells☆116Jan 15, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pipeline for designing custom probes against human genes☆22Jan 30, 2026Updated 2 months ago
- Unix terminal histograms, sequencing depth and bar charts (hissyfit). Small data/file munge, morph, find and count scripts/functions in v…☆22Feb 5, 2026Updated 2 months ago
- Template repository for creating novel models with scvi-tools☆20Jan 18, 2023Updated 3 years ago
- R package for creating sequence logo plots☆22Feb 1, 2024Updated 2 years ago
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆24Feb 24, 2025Updated last year
- A cross-platform application to control the LEGO Mindstorms RCX USB infrared transmission tower.☆11Jun 24, 2024Updated last year
- Using rio-tiler-mvt to create Mapbox satellite + Elevation 3d Vector tiles.☆13Jun 24, 2019Updated 6 years ago
- Chromatin contact paired-read single-cell Hi-C processing module for Nuc3D and NucTools☆15Sep 15, 2025Updated 7 months ago
- Invariant Representation learning☆20Jun 26, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- University of Cambridge PhD thesis☆16Jan 8, 2021Updated 5 years ago
- Identification of spatial homogeneous regions☆21Oct 6, 2025Updated 6 months ago
- Single Cell Consensus Clustering with Speed☆21Dec 12, 2022Updated 3 years ago
- Code for creating cell-type-specific regulatory element annotation files☆20Jun 11, 2024Updated last year
- Particle dynamics and simulated annealing for chromosome structure calculation☆18Jan 17, 2018Updated 8 years ago
- Discrete Distributional Differential Expression☆22Jan 3, 2019Updated 7 years ago
- Snakemake pipeline for microexon discovery and quantification☆21Jan 16, 2025Updated last year