A multiscale pangenome browser
☆29Mar 6, 2026Updated 2 weeks ago
Alternatives and similar repositories for pangyplot
Users that are interested in pangyplot are comparing it to the libraries listed below
Sorting:
- ☆29Mar 27, 2024Updated last year
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆18Feb 26, 2026Updated 3 weeks ago
- implicit pangenome graph☆97Mar 13, 2026Updated last week
- A toolkit for exploring regions of variation in pangenomes☆14Feb 14, 2026Updated last month
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆38Dec 30, 2025Updated 2 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37May 29, 2025Updated 9 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- ☆41Feb 15, 2026Updated last month
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 6 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 10 months ago
- Set of script for the paper on the cattle graph genome☆14Jan 10, 2023Updated 3 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 4 years ago
- ☆19May 10, 2023Updated 2 years ago
- An experimental tool to find approximate max-cuts in a large graph☆10Apr 28, 2021Updated 4 years ago
- GFA visualizer, GPU-accelerated using Vulkan☆76Aug 2, 2022Updated 3 years ago
- Misassembly Identifier☆17Mar 4, 2026Updated 2 weeks ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids using protein structural information☆42Updated this week
- Code for assembly approach presented in "Haplotype-resolved assembly of a tetraploid potato genome using long reads and low-depth offspri…☆14Nov 20, 2023Updated 2 years ago
- Genome browser hub for the T2T genomes and resources☆27Mar 11, 2026Updated last week
- 🎆 ✨ Wrapper around fireworks-js to bring fireworks to your Shiny application☆10Mar 8, 2026Updated last week
- ☆18Jan 29, 2025Updated last year
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- Minimum Bait Cover Toolkit Syotti.☆13Jan 22, 2025Updated last year
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Feb 13, 2023Updated 3 years ago
- Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscript…☆18Mar 12, 2026Updated last week
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆30Mar 9, 2026Updated last week
- Rapid competitive read demulitplexer. Made with tries.☆23May 19, 2025Updated 10 months ago
- MYB transcription factors are one of the largest gene family in plants and control many processes. This repository provides additional ba…☆12Feb 26, 2026Updated 3 weeks ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆22Sep 5, 2023Updated 2 years ago
- base-accurate DNA sequence alignments using WFA and mashmap3☆210Mar 10, 2026Updated last week
- Simple pileup-based variant caller☆94Apr 25, 2025Updated 10 months ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated last year
- kvector is a small utility for converting motifs to kmer vectors to compare motifs of different lengths☆10May 29, 2017Updated 8 years ago
- Fast and exact ILP-based solvers for the Minimum Flow Decomposition problem, and variants of it.☆14Dec 4, 2025Updated 3 months ago
- ☆10Feb 23, 2024Updated 2 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago