brentp / pbrLinks
drunk on perbase pileups and lua expressions
☆18Updated 3 weeks ago
Alternatives and similar repositories for pbr
Users that are interested in pbr are comparing it to the libraries listed below
Sorting:
- Hidden Markov Model based Copy number caller☆20Updated 7 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated this week
- Variant call adjudication☆16Updated 11 months ago
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated last month
- Bam Read Index - Extract alignments from a bam file by readname☆25Updated last year
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- Location of public benchmarking; primarily final results☆18Updated 3 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated last year
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆20Updated this week
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- Sample Contamination Estimate from VCF☆19Updated 7 months ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- URMAP ultra-fast read mapper☆39Updated 4 years ago
- ☆22Updated 6 months ago
- ☆16Updated 4 months ago
- A FASTA/FASTQ format parser library☆20Updated last year
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 2 months ago
- Split a BAM file by haplotype support☆16Updated 7 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 7 months ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- A bioinformatics tool written in Rust to find palindromic sequences in DNA☆35Updated 4 months ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated 8 months ago
- Unfazed by genomic variant phasing☆26Updated last year
- SV analysis of the long-read sequencing data of the 1019 samples of the 1KG-ONT panel☆25Updated last month
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- Haplotype phaser for next-generation sequencing data☆13Updated 3 years ago
- ☆14Updated last year
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆15Updated 4 years ago