drunk on perbase pileups and lua expressions
☆19Nov 15, 2025Updated 6 months ago
Alternatives and similar repositories for pbr
Users that are interested in pbr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 5 months ago
- A very fast interval tree data structure☆132Feb 3, 2025Updated last year
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 4 months ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 3 years ago
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Per-base per-nucleotide depth analysis☆149May 9, 2026Updated 2 weeks ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆29Apr 24, 2025Updated last year
- Portable Crystal binary distributions for Linux on x86_64☆15Mar 22, 2021Updated 5 years ago
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Mar 29, 2023Updated 3 years ago
- an API for intersections of genomic data☆149Mar 12, 2026Updated 2 months ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆24Aug 7, 2023Updated 2 years ago
- DNN-based small variant caller☆12May 2, 2022Updated 4 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆49Apr 20, 2026Updated last month
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- ☆12Apr 18, 2022Updated 4 years ago
- ☆15Updated this week
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- Generic SDK and CLI for GA4GH API services☆15Feb 2, 2026Updated 3 months ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- A local realigner around InDels for MethylSeq data☆12Apr 28, 2016Updated 10 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- ☆18Apr 18, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash and UltraLogLog☆20Jan 22, 2026Updated 4 months ago
- ☆33Nov 6, 2022Updated 3 years ago
- (WIP) best-practices workflow for rare disease☆62Jul 1, 2024Updated last year
- ☆22Jul 28, 2022Updated 3 years ago
- De Bruijn graph construction for large k.☆17Aug 31, 2021Updated 4 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 7 years ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 6 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆18Mar 10, 2022Updated 4 years ago
- A command line program for large scale buffering between piped programs☆17Nov 19, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Generate an enhanced VCF files from ClinVar XML Full releases☆15Feb 23, 2026Updated 3 months ago
- JTK -- a regional diploid genome assembler☆26Apr 22, 2026Updated last month
- These scripts reformat a VCF into a SQLite database, with R☆15Jul 15, 2021Updated 4 years ago
- Randomly subsample sequencing reads or alignments☆265May 11, 2026Updated last week
- using all the bits for echt rapid variant annotation and filtering☆161Apr 30, 2026Updated 3 weeks ago
- Naive PCA for genotype data☆10Jul 27, 2016Updated 9 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago