jaudoux / kamixLinks
Index and query k-mer matrices in BGZF
☆12Updated 7 years ago
Alternatives and similar repositories for kamix
Users that are interested in kamix are comparing it to the libraries listed below
Sorting:
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 3 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- ☆21Updated last year
- The python binding for D4 format☆16Updated 4 years ago
- Integrated Variant Caller☆17Updated 7 years ago
- Detects human contamination in bam files☆16Updated 5 years ago
- Hidden Markov Model based Copy number caller☆20Updated this week
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- Unfazed by genomic variant phasing☆27Updated last year
- Tools to gather evidence for structural variation via breakpoint detection.☆19Updated 2 weeks ago
- drunk on perbase pileups and lua expressions☆19Updated 3 weeks ago
- ☆12Updated 3 months ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Updated 2 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Updated 6 years ago
- Non-parametric structural variant genotyper☆15Updated 4 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 4 years ago
- ☆16Updated 4 months ago
- Contains the description of a file format to store kmers and associated values☆34Updated 3 years ago
- Sequence Bloom Trees with All/Some split☆11Updated 7 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 8 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Python bindings to minimap2☆16Updated 8 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆23Updated last month
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated last year
- Variant call adjudication☆16Updated last year
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated last year
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 7 years ago