jolespin / leviathanLinks
Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscriptomics
☆10Updated 2 months ago
Alternatives and similar repositories for leviathan
Users that are interested in leviathan are comparing it to the libraries listed below
Sorting:
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated 3 months ago
- ☆12Updated 10 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆43Updated 2 months ago
- Remove human reads from a sequencing run☆40Updated 3 months ago
- software to identify primers that can distinguish genomes☆20Updated 9 months ago
- sunburst plots for taxonomy - working to update Krona☆41Updated last month
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 2 weeks ago
- Drug Resistance Prediction with Reference Graphs☆21Updated last week
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- snakemake-powered cli to download genomes using NCBI datasets☆14Updated 2 months ago
- Simple-to-use interactive comparison of two bacterial genomes☆16Updated last week
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆23Updated 2 weeks ago
- ☆24Updated 9 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 6 months ago
- Genome size estimation from long read overlaps☆62Updated last month
- Chimera: A Versatile Metagenomic Classification Tool☆19Updated this week
- Find Unique genomic Regions☆30Updated this week
- Fast and space-efficient taxonomic classification of long reads☆43Updated 2 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets☆24Updated 3 months ago
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆24Updated 3 weeks ago
- frame-shift correction for long-read (meta)genomics☆33Updated last year
- Detection of NCLDV signatures in 'omic data☆35Updated last year
- Genomic sequence aligner☆31Updated last week
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 2 months ago
- strain-level analysis tools☆39Updated last year
- An community curated awesome list of tools, software, databases and other resources for working/analysing RNA Viruses☆18Updated 2 months ago
- ☆10Updated 4 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 4 months ago