Alternatives and similar repositories for leviathan

Users that are interested in leviathan are comparing it to the libraries listed below

• althonos / pyorthoani
  A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.
  ☆31Updated 4 months ago
• LuoGroup2023 / PanTax
  PanTax: Strain-level metagenomic profiling using pangenome graphs
  ☆44Updated 3 months ago
• pollardlab / MIDAS
  Metagenomic Intra-Species Diversity Analysis (MIDAS)
  ☆39Updated last year
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆59Updated 7 months ago
• althonos / pyfastani
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆23Updated last month
• mbhall88 / nohuman
  Remove human reads from a sequencing run
  ☆45Updated last week
• EnzoAndree / FastMLST
  ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies
  ☆27Updated 3 weeks ago
• treangenlab / lemur
  Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets
  ☆25Updated 4 months ago
• metagenlab / assembly_finder
  snakemake-powered cli to download genomes using NCBI datasets
  ☆14Updated 3 months ago
• wtmatlock / flanker
  Gene-flank analysis tool
  ☆34Updated 11 months ago
• mtisza1 / Cenote-Taker3
  Discover and annotate the virome
  ☆54Updated last month
• SegataLab / viromeqc
  ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…
  ☆20Updated 3 years ago
• rvicedomini / strainberry
  Automated strain separation of low-complexity metagenomes
  ☆53Updated 4 years ago
• gtonkinhill / tracs
  Fast pairwise transmission inference from single genome and/or metagenomic data
  ☆22Updated 4 months ago
• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆29Updated last year
• mathjeff / Mapper
  Genomic sequence aligner
  ☆33Updated last month
• cruizperez / FastAAI
  ☆24Updated 10 months ago
• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆20Updated 3 years ago
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆20Updated 2 weeks ago
• pirovc / grimer
  GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…
  ☆24Updated 2 years ago
• xinehc / melon
  Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes
  ☆35Updated 7 months ago
• thackl / proovframe
  frame-shift correction for long-read (meta)genomics
  ☆33Updated last year
• raw-lab / DeGenPrime
  Primer design from single genes to whole gene families for unlocking the tree of life
  ☆16Updated 6 months ago
• DNKonanov / Snapper
  snapper
  ☆13Updated last year
• taxburst / taxburst
  sunburst plots for taxonomy - working to update Krona
  ☆41Updated 2 months ago
• broadinstitute / GATK-for-Microbes
  ☆29Updated 4 years ago
• leylabmpi / SynTracker
  SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…
  ☆37Updated 2 months ago
• genomic-medicine-sweden / TRANA
  A pipeline based on EMU, a taxonomic profiler optimized for long 16S rRNA reads.
  ☆16Updated this week
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆29Updated 2 years ago
• broadinstitute / StrainGE
  strain-level analysis tools
  ☆39Updated last year