Alternatives and similar repositories for leviathan

Users that are interested in leviathan are comparing it to the libraries listed below

• althonos / pyorthoani
  A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.
  ☆33Updated 5 months ago
• althonos / pyfastani
  Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.
  ☆23Updated 3 months ago
• LuoGroup2023 / PanTax
  PanTax: Strain-level metagenomic profiling using pangenome graphs
  ☆45Updated 2 weeks ago
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆63Updated 9 months ago
• SegataLab / viromeqc
  ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…
  ☆20Updated 3 years ago
• mbhall88 / nohuman
  Remove human reads from a sequencing run
  ☆47Updated last month
• EnzoAndree / FastMLST
  ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies
  ☆27Updated 2 months ago
• rvicedomini / strainberry
  Automated strain separation of low-complexity metagenomes
  ☆52Updated 4 years ago
• pollardlab / MIDAS
  Metagenomic Intra-Species Diversity Analysis (MIDAS)
  ☆41Updated last year
• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆30Updated 2 years ago
• metasnv-tool / metaSNV
  MetaSNV, a metagenomic SNV calling pipeline.
  ☆20Updated 3 years ago
• JensUweUlrich / Taxor
  Fast and space-efficient taxonomic classification of long reads
  ☆43Updated 4 months ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆36Updated last week
• moshi4 / MGCplotter
  Microbial Genome Circular plotting tool for comparative genomics using Circos
  ☆39Updated 2 years ago
• althonos / pyskani
  PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
  ☆28Updated 4 months ago
• DNKonanov / Snapper
  snapper
  ☆13Updated last year
• danielpodlesny / samestr
  SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.
  ☆24Updated 2 months ago
• cruizperez / FastAAI
  ☆24Updated 11 months ago
• gtonkinhill / tracs
  Fast pairwise transmission inference from single genome and/or metagenomic data
  ☆22Updated 5 months ago
• ivlachos / agamemnon
  Accurate metagenomi/metatranscriptomic analysis pipeline
  ☆23Updated 4 years ago
• rrwick / Are-reads-required
  ☆10Updated 7 months ago
• wtmatlock / flanker
  Gene-flank analysis tool
  ☆34Updated last year
• metagenopolis / meteor
  Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…
  ☆33Updated last month
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆20Updated 3 weeks ago
• mathjeff / Mapper
  Genomic sequence aligner
  ☆33Updated 2 months ago
• steineggerlab / ufcg
  UFCG: Universal Fungal Core Genes
  ☆34Updated 5 months ago
• treangenlab / lemur
  Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets
  ☆25Updated 5 months ago
• broadinstitute / StrainGE
  strain-level analysis tools
  ☆39Updated last year
• bluenote-1577 / myloasm
  A new high-resolution long-read metagenome assembler for even noisy reads
  ☆119Updated this week
• faylward / viralrecall
  Detection of NCLDV signatures in 'omic data
  ☆35Updated 3 weeks ago