broadinstitute / pyfrostLinks
Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API
☆27Updated 2 years ago
Alternatives and similar repositories for pyfrost
Users that are interested in pyfrost are comparing it to the libraries listed below
Sorting:
- REINDEER REad Index for abuNDancE quERy☆56Updated 3 months ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- ☆44Updated 3 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆35Updated 11 months ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30Updated 3 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- de Bruijn Graph-based read aligner☆34Updated 7 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆37Updated 11 months ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated last month
- ☆45Updated 2 weeks ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 3 months ago
- Bam Read Index - Extract alignments from a bam file by readname☆28Updated last year
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.