broadinstitute / pyfrost
Python bindings for Bifrost with a NetworkX compatible API
☆28Updated last year
Alternatives and similar repositories for pyfrost:
Users that are interested in pyfrost are comparing it to the libraries listed below
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated 7 months ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Updated last year
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 2 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆36Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 3 years ago
- MIRA sequence assembler☆28Updated 2 months ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆31Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Classify sequencing reads using MinHash.☆48Updated 4 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆20Updated 4 months ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 6 years ago
- Hitting associations with k-mers☆45Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- ☆28Updated last year
- The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)☆16Updated 6 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- Find Unique genomic Regions☆29Updated 2 months ago
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Updated 5 years ago
- Snakemake pipeline for benchmarking read mappers☆16Updated last year
- ☆41Updated 2 weeks ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python☆31Updated 6 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆25Updated 11 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated last year