Alternatives and similar repositories for kcmbt_mt

Users that are interested in kcmbt_mt are comparing it to the libraries listed below

• camillescott / shmlast
  blast, shmlast
  ☆21Updated 4 years ago
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆31Updated last year
• edawson / rkmh
  Classify sequencing reads using MinHash.
  ☆48Updated 5 years ago
• scwatts / genome_painter
  Paint genomes with taxa-specific k-mer probabilities
  ☆15Updated 3 years ago
• nanoporetech / minimappy
  Python bindings to minimap2
  ☆16Updated 8 years ago
• kuleshov / architect
  Scaffolding genomes using synthetic long read clouds
  ☆20Updated 8 years ago
• HongzheGuo / deBGA
  de Bruijn Graph-based read aligner
  ☆33Updated 7 years ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆34Updated 2 years ago
• mreppell / Karp
  Accurate and fast taxonomic classification using pseudoaligning
  ☆21Updated 8 years ago
• kevlar-dev / kevlar
  Reference-free variant discovery in large eukaryotic genomes
  ☆41Updated 4 years ago
• nickloman / poredb
  ☆18Updated 8 years ago
• karel-brinda / samsift
  SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.
  ☆23Updated this week
• Malfoy / BGREAT
  de Bruijn Graph REAd mapping Tool
  ☆14Updated 8 years ago
• dkoslicki / MetaPalette
  Metagenomic profiling and phylogenetic distances via common kmers
  ☆42Updated 4 years ago
• lh3 / trimadap
  Fast but inaccurate adapter trimmer for Illumina reads
  ☆16Updated 3 years ago
• DecodeGenetics / BamHash
  ☆36Updated 5 years ago
• bcgsc / kollector
  de novo targeted gene assembly
  ☆23Updated 4 years ago
• Yandell-Lab / taxonomer_0.5
  full taxonomer cython repository
  ☆22Updated 5 years ago
• jhhung / PEAT
  An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.
  ☆22Updated 4 years ago
• bede / tictax
  Streaming sequence classification with web services ✓📌
  ☆19Updated 2 years ago
• mattloose / RUscripts
  Scripts for implementing read until and other examples.
  ☆32Updated 5 years ago
• ekg / thesis
  my PhD thesis
  ☆36Updated 6 years ago
• ruolin / strawberry
  A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)
  ☆24Updated 4 years ago
• namsyvo / IVC
  Integrated Variant Caller
  ☆17Updated 7 years ago
• gregorykucherov / spaced-seeds-for-metagenomics
  ☆13Updated 9 years ago
• mariokostelac / ra-integrate
  DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)
  ☆18Updated 9 years ago
• usnistgov / pepr
  Pipeline for Evaluating Prokaryotic References
  ☆11Updated 9 years ago
• evoldoers / wtfgenes
  What's The Function of these genes?
  ☆22Updated 8 years ago
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated last month
• svm-zhang / AGOUTI
  Annotated Genome Optimization Using Transcriptome Information
  ☆20Updated 5 years ago