Complex structural variant detection from WGS data
☆31Jan 10, 2025Updated last year
Alternatives and similar repositories for arcsv
Users that are interested in arcsv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 3 years ago
- A tool for detecting CNVs from WGS data☆11Jul 9, 2020Updated 5 years ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 7 years ago
- ☆46Jun 21, 2020Updated 6 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆31Sep 19, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 7 years ago
- Phased assembly variant caller☆141Dec 4, 2024Updated last year
- FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds☆72Nov 12, 2020Updated 5 years ago
- Pre-mAsking Long reads for Mobile Element inseRtion☆10Feb 27, 2023Updated 3 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- A Data Fusion Method for Multi Source (VCF4.0+) Structural Variation Analysis☆23Feb 4, 2025Updated last year
- ☆11Jun 26, 2020Updated 6 years ago
- Targeted genotyper for complex polymorphic genes☆42Updated this week
- Vim syntax highlighting for WDL☆20Jul 28, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated 2 years ago
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆12Oct 24, 2022Updated 3 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 4 years ago
- Expanded STR algorithm for Illumina sequencing data☆23Sep 11, 2022Updated 3 years ago
- ☆14Oct 29, 2021Updated 4 years ago
- Comprehensive benchmark of structural variant callers☆49Feb 4, 2021Updated 5 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆38Oct 14, 2025Updated 8 months ago
- Rust implmentation of VCF parser☆27Oct 2, 2022Updated 3 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆18Aug 6, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆49Feb 23, 2021Updated 5 years ago
- Genotyping of segregating mobile elements insertions☆19Jul 29, 2021Updated 4 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Oct 22, 2019Updated 6 years ago
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Dec 6, 2024Updated last year
- Bayesian genotyper for structural variants☆136Apr 13, 2026Updated 2 months ago
- Support Vector Structural Variation Genotyper☆59May 29, 2020Updated 6 years ago
- Noise-Cancelling Repeat Finder☆27Apr 2, 2026Updated 2 months ago
- Tools to process LIANTI sequence data☆23Feb 20, 2019Updated 7 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Jan 17, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆69Aug 16, 2023Updated 2 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆31Feb 20, 2021Updated 5 years ago
- ☆10Nov 30, 2024Updated last year
- A Mendelian approach to variant effect prediction built in keras☆20Nov 3, 2025Updated 7 months ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆40May 19, 2026Updated last month
- Jasmine: SV Merging Across Samples☆255Dec 20, 2024Updated last year
- Linear-time, low-memory construction of variation graphs☆20Feb 3, 2020Updated 6 years ago