SUwonglab / arcsv
Complex structural variant detection from WGS data
☆28Updated 2 months ago
Alternatives and similar repositories for arcsv:
Users that are interested in arcsv are comparing it to the libraries listed below
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago
- Immuological gene typing and annotation for genome assembly☆35Updated 2 weeks ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆30Updated 3 years ago
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- A long-read analysis toolbox for cancer and population genomics☆22Updated last month
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- ☆48Updated 9 months ago
- Set of tools to manipulate and visualize modified base bam files☆52Updated 2 years ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- Support Vector Structural Variation Genotyper☆58Updated 4 years ago
- Custom tools to 'facilitate' BioNano Genomics data analysis☆33Updated 6 years ago
- Variant annotation and merging pipeline☆32Updated 2 months ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆50Updated 4 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Updated 6 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 4 years ago
- R code to compute the Singleton Density Score (SDS)☆28Updated 8 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Transcript assembly and quantification for RNA-Seq☆8Updated 5 years ago
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated this week
- SV genotyping with long reads☆40Updated last year
- UCSC Nanopore☆43Updated 5 years ago
- ☆79Updated 3 weeks ago
- Structural Variants Pipeline for Long Reads☆44Updated 6 years ago
- processing 10x genomics reads☆25Updated 5 years ago
- Structural variant merging tool☆49Updated 7 months ago