broadinstitute / vim-wdlLinks
Vim syntax highlighting for WDL
☆20Updated 4 years ago
Alternatives and similar repositories for vim-wdl
Users that are interested in vim-wdl are comparing it to the libraries listed below
Sorting:
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 9 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- create a gemini-compatible database from a VCF☆55Updated 4 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 3 weeks ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Python package and routines for merging VCF files☆29Updated 4 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 9 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 3 months ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- for visual evaluation of read support for structural variation☆55Updated last year
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆21Updated 8 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago