broadinstitute / vim-wdlLinks
Vim syntax highlighting for WDL
☆20Updated 4 years ago
Alternatives and similar repositories for vim-wdl
Users that are interested in vim-wdl are comparing it to the libraries listed below
Sorting:
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 4 months ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 9 years ago
- Fast sequencing data quality metrics☆31Updated 4 months ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 6 years ago
- Merging paired-end reads and removing adapters☆30Updated 5 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated last month
- A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis☆23Updated 2 months ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Updated 5 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- for visual evaluation of read support for structural variation☆55Updated last year
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Updated 2 years ago
- A tutorial on structural variant calling for short read sequencing data☆38Updated last year
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆30Updated 4 years ago
- mgikit is a collection of tools used to demultiplex fastq files and generate demultiplexing and quality reports.☆17Updated last month
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆59Updated 8 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 9 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago