broadinstitute / vim-wdl
Vim syntax highlighting for WDL
☆20Updated 3 years ago
Alternatives and similar repositories for vim-wdl:
Users that are interested in vim-wdl are comparing it to the libraries listed below
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- Python scripts for matching output of Pacific Biosciences IsoSeq RNA-seq pipeline to an annotation file.☆23Updated 9 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 8 months ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated this week
- BigWig manpulation tools using libBigWig and htslib☆29Updated 6 months ago
- simple library for dealing with SAM cigar strings☆40Updated 4 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 2 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 9 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆21Updated 7 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago
- ☆20Updated 2 months ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 8 years ago
- This repository contains information about ongoing analysis performed by GIAB☆14Updated 5 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 6 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- Adapters for trimming☆30Updated 6 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Fast sequencing data quality metrics☆24Updated 2 weeks ago