AlgoLab / HapCHAT
Adaptive haplotype assembly for efficiently leveraging high coverage in long reads
☆12Updated 6 years ago
Alternatives and similar repositories for HapCHAT
Users that are interested in HapCHAT are comparing it to the libraries listed below
Sorting:
- mreps: software for tandem repeat identification in DNA☆14Updated 5 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Pan gGnome Viewer☆10Updated last year
- Scalable and High Performance Variant Calling on Cluster Environments☆10Updated 3 years ago
- ☆14Updated 5 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Hidden Markov Model based Copy number caller☆20Updated 6 months ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- A transposition caller.☆10Updated last year
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Updated 3 years ago
- Detects human contamination in bam files☆16Updated 4 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 5 years ago
- ☆11Updated 2 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- Hybrid Error Correction of Long Reads using Iterative Learning☆10Updated 6 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- ☆12Updated 2 weeks ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 10 months ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 7 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Updated 5 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last year
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- ☆19Updated 8 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 3 years ago