quinlan-lab / ccrhtml
A small repo for storing the code for making the files and html for CCRs.
☆22Updated 5 years ago
Alternatives and similar repositories for ccrhtml:
Users that are interested in ccrhtml are comparing it to the libraries listed below
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated last month
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆10Updated 5 years ago
- ☆21Updated last week
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- Haplotype-based somatic genome simulator☆10Updated 7 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 6 years ago
- Prioritize structural variants based on CADD scores☆28Updated 4 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 2 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆28Updated 8 months ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 5 years ago
- ☆29Updated 4 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- Sample Contamination Estimate from VCF☆19Updated 4 months ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 2 weeks ago
- ☆11Updated 6 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 7 months ago
- Automated human exome/genome variants detection from FASTQ files☆22Updated 3 years ago