quinlan-lab / ccrhtmlLinks
A small repo for storing the code for making the files and html for CCRs.
☆22Updated 5 years ago
Alternatives and similar repositories for ccrhtml
Users that are interested in ccrhtml are comparing it to the libraries listed below
Sorting:
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 weeks ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆12Updated 5 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- Haplotype-based somatic genome simulator☆10Updated 8 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- ☆11Updated 7 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- sort genomic data☆36Updated 5 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- ☆21Updated this week
- ☆13Updated 7 years ago
- CAVA (Clinical Annotation of VAriants)☆14Updated 6 years ago
- Somatic (mosaic) SNV caller for 10X Genomics data using random forest classification and feature-based filters☆24Updated 6 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 5 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- full taxonomer cython repository☆22Updated 5 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- A tool for evaluating RNA seq mapping☆22Updated 6 years ago