High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.
☆67Aug 16, 2023Updated 2 years ago
Alternatives and similar repositories for AHRD
Users that are interested in AHRD are comparing it to the libraries listed below
Sorting:
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- De novo estimates of genetic relatedness from next-gen sequencing data☆45Jul 28, 2019Updated 6 years ago
- ☆28Dec 1, 2022Updated 3 years ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Feb 23, 2021Updated 5 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Mar 14, 2023Updated 2 years ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆18Dec 13, 2024Updated last year
- finshingTool☆54Nov 22, 2016Updated 9 years ago
- 🗻 Visualization of genome/gene sequence synteny☆42Dec 13, 2023Updated 2 years ago
- TSEBRA: Transcript Selector for BRAKER☆49Nov 14, 2025Updated 3 months ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Aug 18, 2020Updated 5 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22May 29, 2018Updated 7 years ago
- Long Reads Annotation pipeline☆73Mar 31, 2022Updated 3 years ago
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Jan 2, 2024Updated 2 years ago
- a Sequencing Quality Assessment Tool☆17Jul 28, 2022Updated 3 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆26Oct 24, 2025Updated 4 months ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55May 17, 2022Updated 3 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- Efficient indexing and querying of annotations in a pangenome graph☆10Oct 29, 2025Updated 4 months ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆59Sep 5, 2017Updated 8 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Mar 5, 2018Updated 7 years ago
- source code for EVM☆122Nov 29, 2024Updated last year
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆207Nov 18, 2022Updated 3 years ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 4 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated last year
- Just Annotate My Genome☆19Sep 17, 2024Updated last year
- KAUST Assembly Read Error Correction Tool☆15Aug 15, 2015Updated 10 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Dec 7, 2018Updated 7 years ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Aug 1, 2025Updated 7 months ago
- ☆44May 8, 2024Updated last year
- Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences☆18Jan 19, 2023Updated 3 years ago
- Automated optimisation of de-novo transcriptome assembly☆25Nov 11, 2015Updated 10 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 6 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 5 years ago
- Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to s…☆108Jan 30, 2026Updated last month
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆16Jan 12, 2026Updated last month
- Visualize whole genome alignments as linear maps☆74Jan 21, 2026Updated last month