A tool for detecting CNVs from WGS data
☆11Jul 9, 2020Updated 6 years ago
Alternatives and similar repositories for ERDS
Users that are interested in ERDS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 5 years ago
- Complex structural variant detection from WGS data☆31Jan 10, 2025Updated last year
- An interpretable machine learning algorithm to predict disordered protein phase separation based on biophysical interactions☆14Apr 10, 2026Updated 4 months ago
- FASTQ compression via boosting Sequence Compression Algorithms using Locally Consistent Encoding☆14Sep 11, 2020Updated 5 years ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 7 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Obsolete!! Begin to turn to PrimerServer2☆10Jul 22, 2019Updated 7 years ago
- A software package for detection of copy number alterations from tumor samples☆12May 8, 2015Updated 11 years ago
- All JBrowse plugins created by Brigitte Hofmeister☆10Apr 27, 2018Updated 8 years ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- A transposition caller.☆12Oct 5, 2023Updated 2 years ago
- Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes☆11Nov 18, 2022Updated 3 years ago
- CNV Rapid Aberration Detection And Reporting☆13Mar 2, 2021Updated 5 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Building the constrained coding regions (CCR) model☆16Dec 19, 2018Updated 7 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 3 years ago
- Graphite - Graph-based variant adjudication☆28Feb 9, 2021Updated 5 years ago
- Example R scripts to run burden and association analysis on array CNV data☆14Nov 9, 2016Updated 9 years ago
- 3D GWAS across multiple phenotypes☆13Oct 11, 2022Updated 3 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆16Jun 25, 2019Updated 7 years ago
- BlueSNP☆15Apr 14, 2014Updated 12 years ago
- Detection and Visualization of Exon-Level Copy Number Variants in Targeted Next Generation Sequencing Data☆18Nov 26, 2021Updated 4 years ago
- Plot CNV data with a genome viewer in R☆16Apr 5, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Jul 7, 2023Updated 3 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Jul 30, 2020Updated 6 years ago
- A mosaic detecting software based on phasing and random forest☆71Dec 8, 2025Updated 8 months ago
- CNV detection tool for targeted NGS panel data☆17Feb 28, 2022Updated 4 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Oct 22, 2019Updated 6 years ago
- ☆14Jul 14, 2026Updated last month
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆22Aug 13, 2026Updated 2 weeks ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Oct 5, 2019Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Sample Contamination Estimate from VCF☆21Nov 6, 2024Updated last year
- Genotyping of segregating mobile elements insertions☆19Jul 29, 2021Updated 5 years ago
- ☆18Jun 3, 2020Updated 6 years ago
- Deep learning-based structural variant filtering method☆40Nov 19, 2023Updated 2 years ago
- Visualization and annotation of CNVs from population-scale whole-genome sequencing data☆73Jan 8, 2018Updated 8 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Dec 13, 2019Updated 6 years ago
- Esta es una plantilla para poner sitios web en mantenimiento☆11Apr 7, 2024Updated 2 years ago