Pre-mAsking Long reads for Mobile Element inseRtion
☆10Feb 27, 2023Updated 3 years ago
Alternatives and similar repositories for PALMER
Users that are interested in PALMER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pre-mAsking Long reads for Mobile Element inseRtion☆21Jul 24, 2026Updated 2 weeks ago
- A CNN model to identify MEIs in WGS☆14Mar 4, 2025Updated last year
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆19Jan 16, 2026Updated 6 months ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆14Apr 5, 2025Updated last year
- A tool for diagnosing SMA in exome, genome or targeted sequencing data☆13Jul 1, 2026Updated last month
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A machine learning tool to predict tandem repeat pathogenicity☆12Jan 2, 2024Updated 2 years ago
- Miscellaneous scripts for applications of PacBio systems☆27Apr 19, 2022Updated 4 years ago
- ☆35Apr 20, 2026Updated 3 months ago
- VCF files of SVs using long-read sequencing (LRS).☆22Dec 17, 2021Updated 4 years ago
- ☆15Jul 21, 2022Updated 4 years ago
- A tool that lets you quickly flip through images in a local directory and record notes or answer questions about each one.☆22Jul 23, 2026Updated 3 weeks ago
- ☆24Jul 29, 2025Updated last year
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆24Jul 12, 2026Updated last month
- An easy-to-use python package can be used for genomic visual analysis☆23Apr 20, 2024Updated 2 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Tandem Repeats Caller for LOng Reads☆17May 28, 2021Updated 5 years ago
- Genotyping of segregating mobile elements insertions☆19Jul 29, 2021Updated 5 years ago
- Alignment-based Scrubbing pipeline☆21Mar 14, 2024Updated 2 years ago
- Expanded STR algorithm for Illumina sequencing data☆24Sep 11, 2022Updated 3 years ago
- snakemake workflow for post-processing scATACseq data☆23Jul 15, 2020Updated 6 years ago
- Graph based multi genome aligner☆49Sep 17, 2021Updated 4 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆38Sep 17, 2022Updated 3 years ago
- Detect novel (and reference) STR expansions from short-read data☆71Dec 6, 2025Updated 8 months ago
- Public Repo of documentation and scripts how to use GUFI to generate reports to identify data suitable for archive☆14Jan 12, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Jul 2, 2020Updated 6 years ago
- ☆23Sep 21, 2021Updated 4 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆32Jul 3, 2026Updated last month
- software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis☆31Jan 24, 2022Updated 4 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 5 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆27Aug 20, 2020Updated 5 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 4 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated 2 years ago
- ☆14Jul 14, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Nanopanel2: a somatic variant caller for Nanopore panel sequencing data☆11Sep 21, 2021Updated 4 years ago
- Data and information about the Polaris study☆56Nov 18, 2019Updated 6 years ago
- ☆41Jul 3, 2025Updated last year
- exploratory scripts for clustering ccs amplicon data☆11Feb 2, 2021Updated 5 years ago
- A module for improving the insertion sequences of structural variant calls☆33Jul 14, 2021Updated 5 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆31Sep 19, 2022Updated 3 years ago
- Approach to identify simple and complex structural genomic rearrangements using a randomized approach☆21Nov 14, 2018Updated 7 years ago