Alternatives and similar repositories for PALMER

Users that are interested in PALMER are comparing it to the libraries listed below

• WeichenZhou / PALMER
  Pre-mAsking Long reads for Mobile Element inseRtion
  ☆18Updated this week
• skoren / triobinningScripts
  Scripts to reproduce TrioBinning manuscript
  ☆17Updated 5 years ago
• smehringer / SViper
  Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
  ☆32Updated 3 years ago
• WGLab / DeepRepeat
  An accurate repeat detection from Nanopore data using deep learning and image techniques
  ☆24Updated 2 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆54Updated 5 years ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆33Updated 4 years ago
• ndierckx / combiSV
  Combine structural variation outputs from long sequencing reads into a superior call set
  ☆18Updated 6 months ago
• farhangus / Sniffles2_plot
  ☆33Updated last year
• EichlerLab / svpop
  Variant annotation and merging pipeline
  ☆42Updated 6 months ago
• vgteam / sv-genotyping-paper
  ☆31Updated 6 years ago
• fritzsedlazeck / SVCollector
  Method to optimally select samples for validation and resequencing
  ☆30Updated 4 years ago
• arnederoeck / NanoSatellite
  Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.
  ☆32Updated 5 years ago
• popitsch / nanopanel2
  Nanopanel2: a somatic variant caller for Nanopore panel sequencing data
  ☆11Updated 4 years ago
• BGI-Qingdao / HAST
  HAST: Haplotype-Resolved Assembly for Synthetic Long Reads Using A Trio-Binning Strategy
  ☆18Updated 2 years ago
• mritchielab / restrander
  ☆12Updated last month
• monarch-initiative / SvAnna
  Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing
  ☆39Updated 2 months ago
• Nextomics / nextsv
  ☆36Updated last year
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆38Updated 9 years ago
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆46Updated 7 months ago
• zstephens / telogator
  A method for measuring chromosome-specific telomere length from long reads
  ☆22Updated last year
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆24Updated 5 years ago
• dantaki / CNVplot
  Plot CNV data with a genome viewer in R
  ☆15Updated 8 years ago
• Xinglab / TideHunter
  TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
  ☆21Updated last year
• LeanQ / SPLITREADER
  Split-read pipeline for the identification of non-reference TE insertions with TSDs
  ☆25Updated 5 years ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆43Updated 2 years ago
• stat-lab / MOPline
  Detection and genotyping of structural variants
  ☆20Updated 3 months ago
• cmdoret / tinycov
  Command line tool to plot genomic coverage from a BAM file
  ☆14Updated 2 years ago
• llecompte / SVJedi
  SV genotyping with long reads
  ☆40Updated 2 years ago
• wtsi-hpag / Scaff10X
  Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
  ☆21Updated 3 years ago
• MeHelmy / princess
  ☆84Updated 11 months ago