Pre-mAsking Long reads for Mobile Element inseRtion
☆10Feb 27, 2023Updated 3 years ago
Alternatives and similar repositories for PALMER
Users that are interested in PALMER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pre-mAsking Long reads for Mobile Element inseRtion☆20Jul 24, 2026Updated 3 months ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆19Jan 16, 2026Updated 9 months ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆14Apr 5, 2025Updated last year
- A tool for diagnosing SMA in exome, genome or targeted sequencing data☆14Jul 1, 2026Updated 4 months ago
- A python library for decomposing and visualizing tandem repeat sequences☆11May 26, 2026Updated 5 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A machine learning tool to predict tandem repeat pathogenicity☆12Jan 2, 2024Updated 2 years ago
- A CNN model to identify MEIs in WGS☆14Mar 4, 2025Updated last year
- Miscellaneous scripts for applications of PacBio systems☆27Apr 19, 2022Updated 4 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Dec 17, 2021Updated 4 years ago
- ☆36Apr 20, 2026Updated 6 months ago
- ☆15Jul 21, 2022Updated 4 years ago
- Genotyping of segregating mobile elements insertions☆19Jul 29, 2021Updated 5 years ago
- computational tool to identify trasposable element insertions using Hi-C data☆10Sep 17, 2020Updated 6 years ago
- Tandem Repeats Caller for LOng Reads☆17May 28, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- An easy-to-use python package can be used for genomic visual analysis☆23Apr 20, 2024Updated 2 years ago
- Alignment-based Scrubbing pipeline☆21Mar 14, 2024Updated 2 years ago
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆24Updated this week
- A tool that lets you quickly flip through images in a local directory and record notes or answer questions about each one.☆23Jul 23, 2026Updated 3 months ago
- Expanded STR algorithm for Illumina sequencing data☆24Sep 11, 2022Updated 4 years ago
- ☆25Jul 29, 2025Updated last year
- Graph based multi genome aligner☆49Sep 17, 2021Updated 5 years ago
- snakemake workflow for post-processing scATACseq data☆23Jul 15, 2020Updated 6 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆39Sep 17, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 5 years ago
- software tool for the manipulation, annotation, selection, and analysis of variants in the context of next-gen sequencing analysis☆31Jan 24, 2022Updated 4 years ago
- Detect novel (and reference) STR expansions from short-read data☆72Dec 6, 2025Updated 10 months ago
- ☆23Sep 21, 2021Updated 5 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆27Aug 20, 2020Updated 6 years ago
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 5 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆32Jul 3, 2026Updated 3 months ago
- Similar genome assisted reassembly pipeline for PacBio long reads☆11Dec 7, 2021Updated 4 years ago
- exploratory scripts for clustering ccs amplicon data☆11Feb 2, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Jul 2, 2020Updated 6 years ago
- Nanopore raw signal repeat detection pipeline☆45Mar 17, 2023Updated 3 years ago
- DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring v…☆14May 7, 2024Updated 2 years ago
- Data and information about the Polaris study☆56Nov 18, 2019Updated 6 years ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆31Sep 19, 2022Updated 4 years ago
- An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM fil…☆11Sep 17, 2021Updated 5 years ago
- Public Repo of documentation and scripts how to use GUFI to generate reports to identify data suitable for archive☆14Oct 8, 2026Updated 3 weeks ago