lh3 / lianti
Tools to process LIANTI sequence data
☆23Updated 5 years ago
Alternatives and similar repositories for lianti:
Users that are interested in lianti are comparing it to the libraries listed below
- Genomic Association Tester☆30Updated last year
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Immuological gene typing and annotation for genome assembly☆31Updated 3 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 8 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- Adapters for trimming☆30Updated 6 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Structural Variant Prediction Viewer☆33Updated 7 years ago
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- ☆21Updated last month
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated 3 months ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆34Updated last year
- ☆51Updated 5 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 4 months ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated 5 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Reconstruction of focal amplifications with long reads☆18Updated last week
- Python package and routines for merging VCF files☆29Updated 3 years ago
- processing 10x genomics reads☆24Updated 5 years ago
- RNA-seq workflow: differential transcript usage☆20Updated last year
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆40Updated 3 years ago
- Updated and optimized fork of BSMAP☆22Updated 4 years ago
- A variant caller for the GBA gene using WGS data☆21Updated 6 months ago