CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.
☆31Feb 20, 2021Updated 5 years ago
Alternatives and similar repositories for clamms
Users that are interested in clamms are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- WISECONDOR (WIthin-SamplE COpy Number aberration DetectOR): Detect fetal trisomies and smaller CNV's in a maternal plasma sample using wh…☆46Apr 24, 2024Updated 2 years ago
- Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores …☆16Aug 9, 2018Updated 7 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Apr 15, 2026Updated 2 weeks ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Aug 19, 2022Updated 3 years ago
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A pipeline that takes clinical notes from EHRs and generate phenotype terms, then generate ranked gene list☆37Jul 25, 2023Updated 2 years ago
- Divine: Prioritizing Genes for Rare Mendelian Disease in Whole Exome Sequencing Data☆13Apr 18, 2019Updated 7 years ago
- Interactive table from gemini output☆10Mar 5, 2019Updated 7 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆89Mar 27, 2026Updated last month
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Feb 9, 2026Updated 2 months ago
- Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.☆22Feb 10, 2019Updated 7 years ago
- Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensemb…☆10May 7, 2017Updated 8 years ago
- A Mendelian approach to variant effect prediction built in keras☆20Nov 3, 2025Updated 5 months ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Dec 14, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆12Sep 3, 2019Updated 6 years ago
- A small repo for storing the code for making the files and html for CCRs.☆22Oct 22, 2019Updated 6 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Sep 12, 2018Updated 7 years ago
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Mar 12, 2018Updated 8 years ago
- Gene Exploration System for Variance☆22Dec 8, 2022Updated 3 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 8 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆401Aug 30, 2025Updated 7 months ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Oct 31, 2019Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Collection of notes and scripts related to NGS☆14Feb 18, 2026Updated 2 months ago
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆18May 9, 2024Updated last year
- variant discovery and annotation using GATK and Ensembl☆17Jun 27, 2013Updated 12 years ago
- ☆192Jun 20, 2023Updated 2 years ago
- Website to analyze conflicting assertions in ClinVar☆19Mar 16, 2026Updated last month
- structural variant calling and genotyping with existing tools, but, smoothly.☆264Jun 17, 2024Updated last year
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Nov 4, 2019Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- ☆29Feb 17, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆235Feb 17, 2022Updated 4 years ago
- Personal Cancer Genome Reporter (PCGR)☆276Updated this week
- ☆12Oct 11, 2024Updated last year
- Identification of structural variations☆12Jul 22, 2022Updated 3 years ago
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Nov 19, 2019Updated 6 years ago
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- Shiny ClinVar web server source code☆12Apr 29, 2019Updated 7 years ago