Alternatives and similar repositories for NoiseCancellingRepeatFinder

Users that are interested in NoiseCancellingRepeatFinder are comparing it to the libraries listed below

• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆47Updated 4 years ago
• lh3 / calN50
  Compute N50/NG50 and auN/auNG
  ☆33Updated 2 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• SouthGreenPlatform / culebrONT
  A snakemake pipeline to assembly, polishing, correction and quality check from Oxford nanopore reads.
  ☆36Updated 8 months ago
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆30Updated last year
• mcfrith / tandem-genotypes
  ☆49Updated last year
• compbiol / CAMSA
  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
  ☆24Updated 5 years ago
• ablab / VerityMap
  ☆39Updated 2 years ago
• mrvollger / NucFreq
  ☆38Updated 2 months ago
• PacificBiosciences / apps-scripts
  Miscellaneous scripts for applications of PacBio systems
  ☆27Updated 3 years ago
• smehringer / SViper
  Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.
  ☆32Updated 3 years ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆32Updated 4 years ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆47Updated 5 years ago
• arnederoeck / NanoSatellite
  Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.
  ☆32Updated 5 years ago
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 6 years ago
• mrvollger / SDA
  Segmental Duplication Assembler (SDA).
  ☆44Updated 2 years ago
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆37Updated last week
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆50Updated 3 weeks ago
• mrvollger / SafFire
  ☆31Updated 7 months ago
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆67Updated 3 years ago
• shingocat / lrscaf
  TGS scaffolding
  ☆47Updated 4 years ago
• mktle / colorSV
  somatic SV calling on matched tumor-normal co-assembly graphs
  ☆22Updated last year
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆53Updated 9 months ago
• vgteam / sv-genotyping-paper
  ☆31Updated 6 years ago
• pangenome / vcfbub
  use variant nesting information to flter overlapping sites from vg deconstruct output
  ☆30Updated 6 months ago
• agshumate / LiftoffTools
  ☆29Updated 2 years ago
• schatzlab / crossstitch
  Code for phasing SVs with SNPs
  ☆52Updated 5 years ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆36Updated 3 years ago
• maickrau / ribotin
  ☆38Updated 4 months ago
• TravisWheelerLab / ULTRA
  ULTRA Locates Tandemly Repetitive Areas
  ☆38Updated last month