makovalab-psu / NoiseCancellingRepeatFinderView external linksLinks
Noise-Cancelling Repeat Finder
☆27Apr 11, 2023Updated 2 years ago
Alternatives and similar repositories for NoiseCancellingRepeatFinder
Users that are interested in NoiseCancellingRepeatFinder are comparing it to the libraries listed below
Sorting:
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- ☆10Jun 9, 2020Updated 5 years ago
- Nanopore raw signal repeat detection pipeline☆45Mar 17, 2023Updated 2 years ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 2 years ago
- ☆15Aug 22, 2023Updated 2 years ago
- Structural Variants Assessment Based on Haplotype-resolved Assemblies☆21Apr 28, 2023Updated 2 years ago
- ☆16Jan 10, 2022Updated 4 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Jul 2, 2020Updated 5 years ago
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆18Jul 11, 2022Updated 3 years ago
- GBWT-based handle graph☆31Updated this week
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆28Mar 18, 2022Updated 3 years ago
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 2 months ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆35Dec 24, 2025Updated last month
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 5 years ago
- ☆10Mar 4, 2025Updated 11 months ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Sep 19, 2022Updated 3 years ago
- ☆51Jun 25, 2024Updated last year
- Ultra-efficient mapping-free structural variation genotyper☆20Jul 28, 2021Updated 4 years ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Dec 2, 2022Updated 3 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Aug 15, 2018Updated 7 years ago
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆24Feb 28, 2023Updated 2 years ago
- Ultra-fast, high-performing structural variation (SV) detector☆24Apr 26, 2023Updated 2 years ago
- ☆14Sep 11, 2023Updated 2 years ago
- Filter SAM file for soft and hard clipped alignments☆53Dec 31, 2025Updated last month
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated last year
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 6 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Jul 7, 2020Updated 5 years ago
- Chromosome-level scaffolding using multiple references☆164Sep 8, 2024Updated last year
- recompute GFA link overlaps☆25Sep 14, 2022Updated 3 years ago
- ☆39Feb 22, 2023Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- Find and visualize rearrangements in DNA sequences☆54Dec 1, 2025Updated 2 months ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆17Mar 10, 2022Updated 3 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago
- ☆62Sep 15, 2025Updated 5 months ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Aug 1, 2025Updated 6 months ago
- ☆78Jun 12, 2020Updated 5 years ago