Diploid personal genome assembly and comprehensive variant detection based on linked-reads
☆21Apr 28, 2023Updated 3 years ago
Alternatives and similar repositories for Aquila
Users that are interested in Aquila are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Programs implementing the trio-binning genome assembly method☆21Nov 22, 2023Updated 2 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 7 years ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Nov 20, 2022Updated 3 years ago
- This computational method has been published in BMC genomics as: "Identifying branch-specific positive selection throughout the regulato…☆17Updated this week
- Sequence Distance Graph framework: graph + reads + mapping + analysis☆25Jun 4, 2022Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆10Jun 9, 2020Updated 5 years ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 6 years ago
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆67Mar 20, 2026Updated last month
- ☆11Oct 23, 2019Updated 6 years ago
- ☆17Mar 17, 2023Updated 3 years ago
- a fork of the gap-closing pipeline PBJelly☆15Jan 7, 2019Updated 7 years ago
- ☆78Jun 12, 2020Updated 5 years ago
- An R package built on RMarkdown to create biosketches (e.g. for NIH)☆22Feb 25, 2022Updated 4 years ago
- A graph-based pipeline used to call/genotype snvs/indels/SVs from NGS data☆17Aug 30, 2025Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆24Apr 28, 2026Updated last week
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 5 years ago
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated last year
- Noise-Cancelling Repeat Finder☆27Apr 2, 2026Updated last month
- ☆15Jul 21, 2022Updated 3 years ago
- Introduction to Reproducible Publications with Quarto☆18Apr 28, 2026Updated last week
- Upload test☆23Jan 1, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Oct 1, 2021Updated 4 years ago
- Cyclic DNA Sequence Aligner☆11Apr 15, 2020Updated 6 years ago
- structural variant database software☆48Apr 21, 2026Updated 2 weeks ago
- BlockPolish: accurate polishing of long-read assembly via block divide-and-conquer☆17Jun 15, 2023Updated 2 years ago
- Demonstrating best practices for bioinformatics command line tools☆24Jul 23, 2020Updated 5 years ago
- ☆12Dec 6, 2023Updated 2 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 5 years ago
- This fork of Illumina/ExpansionHunter introduces new features and optimizations☆16Mar 11, 2026Updated last month
- Simulating virus evolution and epidemiology☆21Feb 22, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆16Jul 25, 2021Updated 4 years ago
- A chromosomal visualization package for python.☆15Apr 13, 2026Updated 3 weeks ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 3 months ago
- A scaffold assembling pipeline for stLFR reads.☆14Mar 15, 2021Updated 5 years ago
- De Bruijn graph representation in low memory☆36Jul 6, 2024Updated last year
- GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data☆12Feb 22, 2024Updated 2 years ago
- Copy number estimation and variant calling for duplicated genes using WGS.☆34Apr 29, 2026Updated last week