mills-lab / dinumtLinks
☆13Updated 3 years ago
Alternatives and similar repositories for dinumt
Users that are interested in dinumt are comparing it to the libraries listed below
Sorting:
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- ☆20Updated last year
- MultiBreak-SV identifies structural variants from next-generation paired end data, third-generation long read data, or data from a combin…☆12Updated 8 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated last month
- Ascertained Sequentially Markovian Coalescent☆16Updated 7 months ago
- A software for discovery, genotyping and characterization of structural variants☆22Updated 10 months ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- Compute mean telomere length from Whole Genome Sequencing data.☆15Updated last year
- ☆14Updated last year
- Enabling differential allele-specific analysis☆11Updated 6 months ago
- Tools for merging Tandem Repeat VCF files☆29Updated 2 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆14Updated 6 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 4 months ago
- Expanded STR algorithm for Illumina sequencing data☆23Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆23Updated last year
- Mutation rate analysis of autosomal loci☆14Updated 5 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Updated last month
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆13Updated this week
- Evaluation of phasing performance☆23Updated 7 years ago
- Integrative analysis of complex structural variants☆22Updated 4 years ago
- ☆13Updated 3 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆33Updated 4 months ago
- Immuological gene typing and annotation for genome assembly☆37Updated 4 months ago
- Benchmark structural variant calls against a reference set☆17Updated 8 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago