mills-lab / dinumtLinks
☆14Updated 4 years ago
Alternatives and similar repositories for dinumt
Users that are interested in dinumt are comparing it to the libraries listed below
Sorting:
- A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)☆13Updated 7 years ago
- ☆20Updated 2 years ago
- Ascertained Sequentially Markovian Coalescent☆16Updated last month
- ☆14Updated last year
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Updated 3 weeks ago
- Tools for merging Tandem Repeat VCF files☆37Updated 7 months ago
- Plot CNV data with a genome viewer in R☆15Updated 8 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Updated last year
- Functions to compare a SV call sets against a truth set.☆30Updated 5 months ago
- Compute mean telomere length from Whole Genome Sequencing data.☆15Updated last year
- Evaluation of phasing performance☆23Updated 7 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Computes various SV statistics☆14Updated 2 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 4 years ago
- MultiBreak-SV identifies structural variants from next-generation paired end data, third-generation long read data, or data from a combin…☆12Updated 9 years ago
- FastSMC is a method to quickly and accurately estimate pairwise identical-by-descent (IBD) regions in the genome. FastSMC estimates the a…☆14Updated 4 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 9 months ago
- Integrative analysis of complex structural variants☆22Updated 5 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 5 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Mutation rate analysis of autosomal loci☆15Updated 5 years ago
- Structural variant VCF annotation, duplicate removal and comparison☆34Updated 2 months ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- A method for measuring chromosome-specific telomere length from long reads☆22Updated last year
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated 2 years ago
- De-novo Assembly Structural Variant Caller☆13Updated 9 years ago
- ☆15Updated last year
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Updated 5 years ago
- Enabling differential allele-specific analysis☆11Updated 11 months ago