Alternatives and similar repositories for vcf-rs

Users that are interested in vcf-rs are comparing it to the libraries listed below

• zaeleus / squab
  Alignment-based gene expression quantification
  ☆29Updated 2 months ago
• natir / vcf2parquet
  Convert vcf in parquet
  ☆27Updated 9 months ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated last year
• ostnam / rust-wfa
  ☆12Updated 3 years ago
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆37Updated 4 months ago
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆80Updated 3 weeks ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆78Updated 8 months ago
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated last year
• aseyboldt / fastq-rs
  ☆50Updated 3 years ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆93Updated last month
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆30Updated 2 years ago
• jguhlin / sfasta
  sfasta
  ☆35Updated 6 months ago
• sstadick / rumi
  Rust UMI Directional Adjacency Deduplicator
  ☆15Updated 5 years ago
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆70Updated last year
• flalom / vcf-reformatter
  🧬 High-performance VCF file parser and reformatter with VEP annotation support. Converts complex VCF files to analyzable TSV format …
  ☆43Updated 3 months ago
• brentp / vcfexpress
  expressions on VCFs
  ☆86Updated 7 months ago
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆73Updated this week
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• brentp / vcf-bench
  evaluating vcf parsing libraries
  ☆19Updated 3 years ago
• COMBINE-lab / terminus
  ☆57Updated 3 years ago
• fastqc-rs / fastqc-rs
  A quality control tool for FASTQ files written in rust
  ☆52Updated 5 months ago
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆12Updated 11 months ago
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 9 months ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆64Updated last year
• annalam / seqkit
  Toolkit for manipulating FASTA and SAM files
  ☆20Updated last year
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆101Updated 3 weeks ago
• informationsea / bgzip-rs
  bgzip support for Rust
  ☆16Updated 2 years ago
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆52Updated last year
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆32Updated 2 years ago