Alternatives and similar repositories for vcf-rs

Users that are interested in vcf-rs are comparing it to the libraries listed below

• zaeleus / squab
  Alignment-based gene expression quantification
  ☆30Updated 4 months ago
• natir / vcf2parquet
  Convert vcf in parquet
  ☆27Updated 11 months ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆81Updated 2 months ago
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆37Updated 6 months ago
• sstadick / rumi
  Rust UMI Directional Adjacency Deduplicator
  ☆15Updated 6 years ago
• flalom / vcf-reformatter
  🧬 High-performance VCF file parser and reformatter with VEP annotation support. Converts complex VCF files to analyzable TSV format …
  ☆44Updated 4 months ago
• ostnam / rust-wfa
  ☆12Updated 3 years ago
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated last year
• brentp / vcfexpress
  expressions on VCFs
  ☆88Updated 8 months ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆80Updated 9 months ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆93Updated 3 months ago
• aseyboldt / fastq-rs
  ☆50Updated 3 years ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆30Updated 2 years ago
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆12Updated last year
• natir / biotest
  Generate random test data for bioinformatics
  ☆27Updated last year
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆102Updated 2 weeks ago
• COMBINE-lab / terminus
  ☆57Updated 3 years ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆65Updated last year
• informationsea / bgzip-rs
  bgzip support for Rust
  ☆15Updated 2 years ago
• jguhlin / sfasta
  sfasta
  ☆35Updated 8 months ago
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆72Updated last year
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆55Updated 4 months ago
• sstadick / bam-builder
  Wrapper over rust-htslib for building collections of BAM records for testing.
  ☆10Updated 3 weeks ago
• fastqc-rs / fastqc-rs
  A quality control tool for FASTQ files written in rust
  ☆52Updated 6 months ago
• sstadick / perbase
  Per-base per-nucleotide depth analysis
  ☆141Updated 2 weeks ago
• rust-bio / rust-bio-types
  A library of common biomedical types.
  ☆40Updated 8 months ago
• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆23Updated last week
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆52Updated last year