informationsea / vcf-rsLinks
Rust implmentation of VCF parser
☆25Updated 3 years ago
Alternatives and similar repositories for vcf-rs
Users that are interested in vcf-rs are comparing it to the libraries listed below
Sorting:
- Alignment-based gene expression quantification☆28Updated last month
- ☆11Updated 3 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Updated 11 months ago
- Convert vcf in parquet☆27Updated 8 months ago
- Command line utility for working with next-generation sequencing files.☆36Updated 3 months ago
- gia: Genomic Interval Arithmetic☆64Updated last year
- Fasten toolkit, for streaming operations on fastq files☆79Updated 5 months ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- 🧬 High-performance VCF file parser and reformatter with VEP annotation support. Converts complex VCF files to analyzable TSV format …☆39Updated last month
- bioinformatics toolkit in rust☆91Updated last week
- ☆50Updated 3 years ago
- FASTA and FASTQ parsing in Rust☆78Updated 6 months ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- sfasta☆35Updated 5 months ago
- Benchmarking pairwise aligners☆36Updated 7 months ago
- Rust UMI Directional Adjacency Deduplicator☆14Updated 5 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆21Updated last week
- evaluating vcf parsing libraries☆19Updated 3 years ago
- Generate random test data for bioinformatics☆26Updated last year
- A FASTA/FASTQ format parser library☆20Updated last year
- an API for intersections of genomic data☆75Updated last week
- Tools for working FASTQ files from sequencers (R1/R2/I1/I2)☆12Updated 10 months ago
- bgzip support for Rust☆16Updated last year
- A quality control tool for FASTQ files written in rust☆52Updated 3 months ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆10Updated 2 years ago
- De Bruijn graphs in Rust☆70Updated last year
- drunk on perbase pileups and lua expressions☆19Updated 4 months ago
- ☆57Updated 3 years ago
- bedtools-like functionality for interval sets in rust☆53Updated 2 months ago