informationsea / vcf-rsLinks
Rust implmentation of VCF parser
☆25Updated 3 years ago
Alternatives and similar repositories for vcf-rs
Users that are interested in vcf-rs are comparing it to the libraries listed below
Sorting:
- Alignment-based gene expression quantification☆30Updated 4 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- Convert vcf in parquet☆27Updated 11 months ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- Command line utility for working with next-generation sequencing files.☆37Updated 6 months ago
- ☆12Updated 3 years ago
- bioinformatics toolkit in rust☆93Updated 3 months ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output☆10Updated last year
- Generate random test data for bioinformatics☆27Updated last year
- Fasten toolkit, for streaming operations on fastq files☆81Updated 2 months ago
- FASTA and FASTQ parsing in Rust☆80Updated 9 months ago
- Benchmarking pairwise aligners☆36Updated 10 months ago
- Rust UMI Directional Adjacency Deduplicator☆15Updated 6 years ago
- gia: Genomic Interval Arithmetic☆65Updated last year
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Updated 2 years ago
- A FASTA/FASTQ format parser library☆20Updated last year
- expressions on VCFs☆88Updated 8 months ago
- Wrapper over rust-htslib for building collections of BAM records for testing.☆10Updated 3 weeks ago
- 🧬 High-performance VCF file parser and reformatter with VEP annotation support. Converts complex VCF files to analyzable TSV format …☆44Updated 4 months ago
- sfasta☆35Updated 7 months ago
- Rust in bioinformatics and computational biology☆19Updated 3 years ago
- VEP-like tool for sequence ontology and HGVS annotation of VCF files☆23Updated last week
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Updated last month
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Updated 5 years ago
- evaluating vcf parsing libraries☆19Updated 3 years ago
- A quality control tool for FASTQ files written in rust☆52Updated 6 months ago
- Rust bindings to minimap2 library☆102Updated 2 weeks ago
- bgzip support for Rust☆15Updated 2 years ago
- Fast and exact gap-affine partial order alignment☆57Updated last month