Alternatives and similar repositories for vcf-rs

Users that are interested in vcf-rs are comparing it to the libraries listed below

• zaeleus / squab
  Alignment-based gene expression quantification
  ☆28Updated 3 weeks ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆47Updated last year
• ostnam / rust-wfa
  ☆11Updated 3 years ago
• natir / vcf2parquet
  Convert vcf in parquet
  ☆27Updated 7 months ago
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆79Updated 5 months ago
• flalom / vcf-reformatter
  🧬 High-performance VCF file parser and reformatter with VEP annotation support. Converts complex VCF files to analyzable TSV format …
  ☆37Updated last month
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆78Updated 6 months ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆90Updated 3 months ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆31Updated last year
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆75Updated this week
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆30Updated 2 years ago
• stjude-rust-labs / ngs
  Command line utility for working with next-generation sequencing files.
  ☆36Updated 2 months ago
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated 10 months ago
• 10XGenomics / rust-pseudoaligner
  Single-Cell RNA-seq pseudo-aligner
  ☆51Updated last year
• fastqc-rs / fastqc-rs
  A quality control tool for FASTQ files written in rust
  ☆52Updated 3 months ago
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆70Updated last year
• aseyboldt / fastq-rs
  ☆50Updated 2 years ago
• sstadick / rumi
  Rust UMI Directional Adjacency Deduplicator
  ☆14Updated 5 years ago
• brentp / vcfexpress
  expressions on VCFs
  ☆85Updated 4 months ago
• COMBINE-lab / terminus
  ☆57Updated 3 years ago
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆101Updated last week
• sstadick / perbase
  Per-base per-nucleotide depth analysis
  ☆137Updated last month
• jguhlin / sfasta
  sfasta
  ☆35Updated 4 months ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆65Updated last year
• natir / biotest
  Generate random test data for bioinformatics
  ☆26Updated last year
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆53Updated last month
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated last year
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 7 months ago
• EGA-archive / ont2cram
  Oxford Nanopore HDF/Fast5 to CRAM conversion tool
  ☆22Updated 5 years ago
• luizirber / nthash
  ntHash implementation in Rust
  ☆36Updated last year