Rust implmentation of VCF parser
☆27Oct 2, 2022Updated 3 years ago
Alternatives and similar repositories for vcf-rs
Users that are interested in vcf-rs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rust implementation of the wavefront alignment algorithm☆14Jul 4, 2022Updated 4 years ago
- LEGACY repository for SODAR Core, preserved for saving review-related issues. See "sodar-core" for the up-to-date repository.☆15Jun 1, 2022Updated 4 years ago
- Sample Contamination Estimate from VCF☆21Nov 6, 2024Updated last year
- Rust binding for WFA2-lib☆10Jun 7, 2022Updated 4 years ago
- Linear mixed models on ARGs☆18Jan 16, 2026Updated 8 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆23Jul 23, 2023Updated 3 years ago
- GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular …☆48Updated this week
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- Complex structural variant detection from WGS data☆32Jan 10, 2025Updated last year
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- Bayesian analysis of MPRA and other high-throughput genomic assays☆10Jul 27, 2020Updated 6 years ago
- Reference bias measuring toolkit☆22Mar 12, 2026Updated 6 months ago
- GBZ file format for pangenome graphs☆46Sep 14, 2026Updated 2 weeks ago
- A binary serialization format for sparse, labeled 2D numeric datasets☆12Sep 29, 2015Updated 10 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆22Aug 7, 2023Updated 3 years ago
- Simulate short-reads datasets using probabilistic models☆12Jun 1, 2013Updated 13 years ago
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆374Aug 17, 2026Updated last month
- filtering trio-based genetic variants in VCFs for clinical review☆22Aug 18, 2020Updated 6 years ago
- VarFish: comprehensive DNA variant analysis for diagnostics and research☆54Sep 19, 2026Updated last week
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆14Apr 5, 2025Updated last year
- A fast, precise, pure Python implementation of Fisher's exact test☆12Mar 27, 2017Updated 9 years ago
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 6 years ago
- Diploid personal genome assembly and comprehensive variant detection based on linked-reads☆21Apr 28, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- bedtools-like functionality for interval sets in rust☆56Aug 5, 2025Updated last year
- A plant organellar Graphical Fragment Assembly toolkit☆17Updated this week
- Pairwise nucleotide alignment benchmark of Rust bindings☆32Jul 27, 2023Updated 3 years ago
- Explore and analyze biological sequence data