Alternatives and similar repositories for vcf-rs:

Users that are interested in vcf-rs are comparing it to the libraries listed below

• zaeleus / squab
  Alignment-based gene expression quantification
  ☆27Updated last month
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated 9 months ago
• ostnam / rust-wfa
  ☆11Updated 2 years ago
• aseyboldt / fastq-rs
  ☆51Updated 2 years ago
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆92Updated 2 months ago
• COMBINE-lab / terminus
  ☆58Updated 2 years ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆75Updated 2 weeks ago
• mrvollger / rustybam
  bioinformatics toolkit in rust
  ☆87Updated 10 months ago
• 10XGenomics / rust-toolbox
  Rust utility code
  ☆32Updated last year
• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆17Updated 2 months ago
• natir / vcf2parquet
  Convert vcf in parquet
  ☆26Updated 2 months ago
• noamteyssier / gia
  gia: Genomic Interval Arithmetic
  ☆61Updated 7 months ago
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆34Updated 2 months ago
• lskatz / fasten
  Fasten toolkit, for streaming operations on fastq files
  ☆79Updated 2 months ago
• angelovangel / faster
  A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust
  ☆30Updated 2 months ago
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated last year
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• quinlan-lab / bedder-rs
  an API for intersections of genomic data
  ☆75Updated last week
• rust-bio / rust-bio-types
  A library of common biomedical types.
  ☆38Updated 3 weeks ago
• 10XGenomics / rust-debruijn
  De Bruijn graphs in Rust
  ☆66Updated 8 months ago
• HudsonAlpha / fmlrc2
  ☆45Updated 2 years ago
• sstadick / rumi
  Rust UMI Directional Adjacency Deduplicator
  ☆15Updated 5 years ago
• annalam / seqkit
  Toolkit for manipulating FASTA and SAM files
  ☆18Updated last year
• hhandika / segul
  An ultrafast and memory efficient tool for phylogenomics
  ☆24Updated this week
• informationsea / bgzip-rs
  bgzip support for Rust
  ☆16Updated last year
• bsaintjo / slow5-rs
  Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output
  ☆10Updated 4 months ago
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆30Updated last year
• varfish-org / mehari
  VEP-like tool for sequence ontology and HGVS annotation of VCF files
  ☆19Updated this week
• brentp / vcfexpress
  expressions on VCFs
  ☆79Updated last month
• 10XGenomics / fastq_set
  Tools for working FASTQ files from sequencers (R1/R2/I1/I2)
  ☆13Updated 3 months ago