Rust implmentation of VCF parser
☆27Oct 2, 2022Updated 4 years ago
Alternatives and similar repositories for vcf-rs
Users that are interested in vcf-rs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A deletion and duplication caller from NGS paired-end data.☆14Aug 22, 2025Updated last year
- Rust implementation of the wavefront alignment algorithm☆14Jul 4, 2022Updated 4 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated last year
- LEGACY repository for SODAR Core, preserved for saving review-related issues. See "sodar-core" for the up-to-date repository.☆15Jun 1, 2022Updated 4 years ago
- A plant organellar Graphical Fragment Assembly toolkit☆17Sep 24, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Reference bias measuring toolkit☆22Mar 12, 2026Updated 7 months ago
- GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular …☆48Oct 8, 2026Updated last week
- GBZ file format for pangenome graphs☆46Sep 14, 2026Updated last month
- Sample Contamination Estimate from VCF☆21Nov 6, 2024Updated last year
- Process Illumina instrument data into SAM/BAM/CRAM files.☆10Jul 6, 2026Updated 3 months ago
- Ultrafast VCF GenoType Compressor (GTC) with instant random access, shrinking the 4.3 TB HRC dataset (27k samples, 40M variants) down to …☆16Oct 5, 2026Updated last week
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Rust binding for WFA2-lib☆10Jun 7, 2022Updated 4 years ago
- This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.☆375Aug 17, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Programs implementing the trio-binning genome assembly method☆22Nov 22, 2023Updated 2 years ago
- Targeted genotyper for complex polymorphic genes☆50Updated this week
- Linear mixed models on ARGs☆18Jan 16, 2026Updated 9 months ago
- bedtools-like functionality for interval sets in rust☆56Aug 5, 2025Updated last year
- ☆23Jul 23, 2023Updated 3 years ago
- ProGraphMSA is a state-of-the-art multiple sequence alignment tool which produces phylogenetically sensible gap patterns while maintainin…☆11Sep 29, 2020Updated 6 years ago
- sfasta☆35Feb 25, 2026Updated 7 months ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- A data manipulation tool for parquet, csv, and json data.☆43Mar 7, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Complex structural variant detection from WGS data☆32Oct 7, 2026Updated last week
- Convert vcf in parquet☆32Jan 23, 2025Updated last year
- Mapping-free variant caller for short-read Illumina data☆21Apr 2, 2020Updated 6 years ago
- Bayesian analysis of MPRA and other high-throughput genomic assays☆10Jul 27, 2020Updated 6 years ago
- A binary serialization format for sparse, labeled 2D numeric datasets☆12Sep 29, 2015Updated 11 years ago
- Command line utility for working with next-generation sequencing files.☆39Jun 24, 2025Updated last year
- Detect novel (and reference) STR expansions from short-read data☆72Dec 6, 2025Updated 10 months ago
- A library of common biomedical types.☆40Apr 14, 2025Updated last year
- Sparse Project VCF: evolution of VCF to encode population genotype matrices efficiently☆60Oct 29, 2023Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Simple and transparent support for compressed files.☆81Sep 23, 2026Updated 3 weeks ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆22Aug 7, 2023Updated 3 years ago
- Mirage generates multiple sequence alignments of proteoforms by mapping sequences back to their coding regions on the genome and then com…☆10Jun 27, 2025Updated last year
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Feb 17, 2026Updated 8 months ago
- Scalable gVCF merging and joint variant calling for population sequencing projects☆190Apr 12, 2024Updated 2 years ago
- Jasmine: SV Merging Across Samples☆262Dec 20, 2024Updated last year
- Simulate short-reads datasets using probabilistic models☆12Jun 1, 2013Updated 13 years ago