Alternatives and similar repositories for FINSURF

Users that are interested in FINSURF are comparing it to the libraries listed below

• cortes-ciriano-lab / ReConPlot
  ☆24Updated last year
• DecodeGenetics / svimmer
  Structural variant merging tool
  ☆57Updated last year
• LappalainenLab / lorals
  ☆38Updated 2 years ago
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆38Updated 9 months ago
• mortazavilab / cerberus
  ☆20Updated last year
• adamewing / tldr
  Identify and annotate TE-mediated insertions in long-read sequence data
  ☆46Updated 5 months ago
• XiDsLab / TAGET
  ☆20Updated 3 years ago
• OliveiraDS-hub / ChimeraTE
  A pipeline to detect chimeric transcripts derived from genes and transposable elements.
  ☆34Updated 4 months ago
• hall-lab / sv-pipeline
  Pipeline for structural variation detection in cohorts
  ☆52Updated 4 years ago
• JialiUMassWengLab / TEMP
  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…
  ☆22Updated 8 years ago
• zeeev / mergeSVcallers
  heuristics to merge structural variant calls in VCF format.
  ☆38Updated 9 years ago
• UMCUGenetics / COLO829_somaticSV
  Scripts and files used in the generation of the COLO829 somatic SV truthset.
  ☆13Updated 3 years ago
• ksahlin / ultra
  Long-read splice alignment with high accuracy
  ☆64Updated last year
• ucdavis-bioinformatics / proc10xG
  processing 10x genomics reads
  ☆26Updated 6 years ago
• BlanchetteLab / HIFI
  Hi-C Interaction Frequency Inference (HIFI): High-resolution estimation of DNA-DNA interaction frequency from Hi-C data
  ☆24Updated 3 years ago
• TheJacksonLaboratory / SVE
  ☆51Updated 6 years ago
• multiz / multiz
  DNA multiple sequence aligner, official version from Penn State's Miller Lab
  ☆36Updated 6 years ago
• josiegleeson / BamSlam
  Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
  ☆15Updated last year
• ConesaLab / SQANTI
  ☆14Updated 2 years ago
• Augroup / miniQuant
  Improving gene isoform quantification with miniQuant
  ☆31Updated 2 months ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated last year
• fakedrtom / SVAFotate
  ☆44Updated last year
• scottgigante / haplotyped-methylome
  Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation
  ☆23Updated 6 years ago
• gimelbrantlab / Qllelic
  Enabling differential allele-specific analysis
  ☆11Updated 11 months ago
• Xinglab / lr2rmats
  Long read to rMATS
  ☆32Updated 2 years ago
• dixonlab / hic_breakfinder
  ☆37Updated 6 years ago
• KolmogorovLab / minda
  ☆26Updated 8 months ago
• mskilab-org / gGnome
  R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework
  ☆41Updated 2 weeks ago
• tk2 / RetroSeq
  RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…
  ☆67Updated 3 years ago
• zd1 / telseq
  A software for calculating telomere length
  ☆72Updated 7 years ago