RobersonLab / motif_scraperLinks
Tool for finding matches to degenerate sequence motifs in FASTA files.
☆13Updated last year
Alternatives and similar repositories for motif_scraper
Users that are interested in motif_scraper are comparing it to the libraries listed below
Sorting:
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Updated 6 years ago
- Annotate sequences from BLAST against KEGG DB with KO numbers and summarize them in KEGG modules.☆22Updated 7 years ago
- ☆28Updated 3 years ago
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13Updated last year
- Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), ad…☆33Updated 5 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 3 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated last month
- A JBrowse 1 plugin to view multiple alignment format (MAF) files☆27Updated 2 years ago
- ☆26Updated 4 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Just Annotate My Genome☆19Updated last year
- ☆10Updated 7 years ago
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Updated last year
- convert a blast output to a bed file☆12Updated 10 years ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆21Updated 3 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆26Updated 2 months ago
- A Generative Pre-Trained Transformer Package for Pangenomes☆53Updated 8 months ago
- Generating UTRs from SHort Reads☆11Updated 5 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Linear-time de novo Long Read Assembler☆41Updated 3 months ago
- An R package to infer and analyze synteny networks from protein sequences☆36Updated 6 months ago
- Bash scripts and data used in pantranscriptomic paper☆24Updated 3 years ago
- Consensus genome annotation using OMA☆31Updated 3 weeks ago
- Parallel implementation of OrthoMCL☆21Updated 3 years ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- Human pan-genome analysis pipeline☆31Updated 5 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- Python3 module for running MUMmer and reading the output☆33Updated 10 months ago
- Synteny Mapping and Analysis Program☆30Updated this week