Tool for finding matches to degenerate sequence motifs in FASTA files.
☆13Mar 11, 2024Updated 2 years ago
Alternatives and similar repositories for motif_scraper
Users that are interested in motif_scraper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 3 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Oct 4, 2022Updated 4 years ago
- high-performance BED-to-GTF converter written in Rust☆21Aug 9, 2026Updated 2 months ago
- R package to explore active transposable elements with RNA-seq data☆20Nov 25, 2022Updated 3 years ago
- A dotplot application for DNA/RNA sequence☆12Nov 28, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated 2 years ago
- Domain based annotation of transposable elements☆25Jul 21, 2026Updated 3 months ago
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆13Sep 19, 2017Updated 9 years ago
- Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.☆12Mar 9, 2021Updated 5 years ago
- localised duplicate detection on patterned flow cells☆10Feb 27, 2019Updated 7 years ago
- ☆11Feb 12, 2022Updated 4 years ago
- Workflow to identify the centromere dip regions (CDR) from methyl BAMs☆17Jun 4, 2025Updated last year
- Better Alignments with Translated HMMER☆28Updated this week
- GRAph-based Finding of Individual Motif Occurrences☆33Aug 29, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- biogenerator☆13Dec 18, 2015Updated 10 years ago
- A package for making MuE observation models in Edward2.☆13Jun 10, 2021Updated 5 years ago
- A flexible python program for generating figures from regions of the genome.☆13Apr 6, 2019Updated 7 years ago
- Tools for phylogenetic data analysis including visualization and cluster-computing support.☆15Dec 18, 2021Updated 4 years ago
- Code for Shipman et al. 2017☆13Jul 12, 2017Updated 9 years ago
- PyTorch Implementation of DeepSequence☆12Aug 13, 2019Updated 7 years ago
- NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.☆18Sep 7, 2022Updated 4 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 7 years ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Sep 7, 2018Updated 8 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Software for inferring coalescence rates for unphased, low-coverage genomes☆11Jun 11, 2025Updated last year
- NLP for Proteins - A paper collection☆13Sep 10, 2020Updated 6 years ago
- OIST Bioinfo user group☆13Oct 23, 2026Updated last week
- An algorithm for centromere assembly using long error-prone reads☆25May 25, 2021Updated 5 years ago
- Software for detecting transposable element insertions from next-generation sequencing data☆11Feb 24, 2023Updated 3 years ago
- ☆12Feb 14, 2023Updated 3 years ago
- 16S rRNA database☆13Nov 29, 2018Updated 7 years ago
- Pathway-Level Single-Cell Functional Profiling of Individual Patient Samples☆11Aug 6, 2025Updated last year
- A Python package for Biopython that gives feature annotations from GenBank records a new and better life☆14Apr 27, 2016Updated 10 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆27Aug 20, 2020Updated 6 years ago
- A library to create and handle counts files used with PoMo.☆10Jan 24, 2024Updated 2 years ago
- Web interface for browsing, search and filtering recent biorxiv submissions☆14May 7, 2017Updated 9 years ago
- Pipeline for RNA and DNA integrated analysis for somatic mutation detection☆13Updated this week
- Docker image of JBrowse Genome Browser☆15Apr 12, 2021Updated 5 years ago
- convert a blast output to a bed file☆12Jun 19, 2015Updated 11 years ago
- Assemblies from HPP Year 1 production☆83May 9, 2023Updated 3 years ago