Alternatives and similar repositories for famplex:

Users that are interested in famplex are comparing it to the libraries listed below

• mentatpsi / KEGG-Crawler
  A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.
  ☆20Updated last year
• pathwayforte / pathway-forte
  A Python package for benchmarking pathway database with functional enrichment and classification methods
  ☆13Updated 4 years ago
• JonnyTran / OpenOmics
  A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
  ☆32Updated 8 months ago
• netlab-ku / pyPARAGON
  PAgeRAnk-flux on Graphlet-guided network for multi-Omic data integratioN - Network Inference
  ☆11Updated 4 months ago
• bio2bel / bio2bel
  A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
  ☆21Updated 3 years ago
• dhimmel / integrate
  Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing
  ☆32Updated 7 years ago
• hammerlab / t-cell-relation-extraction
  Literature mining for T cell relations
  ☆23Updated 2 years ago
• AnacletoLAB / RNA-KG
  ☆20Updated 4 months ago
• nstrodt / USMPep
  Major Histocompatibility Complex (MHC) Binding Affinity Prediction
  ☆10Updated 3 years ago
• biopragmatics / bioversions
  🪝 What's the latest version for each database?
  ☆27Updated last week
• research-software-ecosystem / content
  A metadata commons to store research software metadata
  ☆41Updated this week
• bio2bel / drugbank
  A Bio2BEL package for DrugBank (https://www.drugbank.ca)
  ☆9Updated 4 years ago
• bio2bel / kegg
  A Bio2BEL package for integrating pathway-related information from KEGG in BEL
  ☆13Updated 3 years ago
• altayg / Deep-Learning-MHCI
  For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow
  ☆12Updated 6 years ago
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆23Updated 2 weeks ago
• krassowski / multi-omics-state-of-the-field
  Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"
  ☆26Updated last year
• cssblab / iOmicsPASS
  Data Integration tool utilizing network information for predictive analyses
  ☆16Updated last year
• monarch-initiative / talisman
  LLM-based gene function enrichment tool
  ☆10Updated last month
• GuiltyTargets / guiltytargets
  Target prioritization using network representation learning
  ☆11Updated 3 years ago
• NeilPearson-Lilly / TractaViewer
  ☆11Updated 5 years ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 2 years ago
• minmarg / comer2
  Fast, sensitive and accurate protein remote homology search on GPUs
  ☆15Updated 10 months ago
• BaderLab / EPIC
  This is the public repository for the EPIC tool.
  ☆17Updated 2 years ago
• rec3141 / ddmp
  Digital Database of Microbial Phenotypes. Like an online Bergey's Manual.
  ☆13Updated 13 years ago
• AstraZeneca / detectIS
  A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data
  ☆12Updated last year
• PathwayCommons / factoid
  A project to capture biological pathway data from academic papers
  ☆29Updated this week
• jakelever / pubrunner
  A framework for keeping biomedical text mining result up-to-date
  ☆42Updated 4 years ago
• RahmanTeam / OpEx
  The OpEx (Optimised Exome) pipeline
  ☆9Updated 6 years ago
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆23Updated last year
• cebel / pyuniprot
  Python package to query and analyse UniProt
  ☆25Updated 4 years ago