Alternatives and similar repositories for famplex:

Users that are interested in famplex are comparing it to the libraries listed below

• bio2bel / bio2bel
  A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
  ☆21Updated 3 years ago
• pathwayforte / pathway-forte
  A Python package for benchmarking pathway database with functional enrichment and classification methods
  ☆13Updated 4 years ago
• monarch-initiative / talisman
  LLM-based gene function enrichment tool
  ☆11Updated last month
• bio2bel / kegg
  A Bio2BEL package for integrating pathway-related information from KEGG in BEL
  ☆13Updated 3 years ago
• mentatpsi / KEGG-Crawler
  A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.
  ☆20Updated last year
• PathwayCommons / factoid
  A project to capture biological pathway data from academic papers
  ☆29Updated 2 weeks ago
• oboformat / oboformat-tools
  ARCHIVED: this has been folded into the owlapi
  ☆11Updated 4 years ago
• JonnyTran / OpenOmics
  A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
  ☆32Updated 9 months ago
• PathwayMerger / PathMe
  Harmonizing pathway databases using Biological Expression Language (BEL)
  ☆19Updated 9 months ago
• dhimmel / integrate
  Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing
  ☆32Updated 7 years ago
• rec3141 / ddmp
  Digital Database of Microbial Phenotypes. Like an online Bergey's Manual.
  ☆13Updated 13 years ago
• BaderLab / EPIC
  This is the public repository for the EPIC tool.
  ☆17Updated 2 years ago
• VariantEffect / mavetools
  Useful functions for manipulating Multiplex Assay of Variant Effect datasets.
  ☆10Updated 2 months ago
• NeilPearson-Lilly / TractaViewer
  ☆11Updated 5 years ago
• bhklab / PGx_Guidelines
  ☆10Updated 3 years ago
• broadinstitute / adapt
  A package for designing activity-informed nucleic acid diagnostics for viruses.
  ☆31Updated 2 years ago
• cebel / pyuniprot
  Python package to query and analyse UniProt
  ☆25Updated 4 years ago
• altayg / Deep-Learning-MHCI
  For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow
  ☆12Updated 6 years ago
• hammerlab / t-cell-relation-extraction
  Literature mining for T cell relations
  ☆23Updated 2 years ago
• netlab-ku / pyPARAGON
  PAgeRAnk-flux on Graphlet-guided network for multi-Omic data integratioN - Network Inference
  ☆11Updated 5 months ago
• AnacletoLAB / RNA-KG
  ☆21Updated 5 months ago
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆23Updated last month
• IEDB / ONTIE
  Ontology for Immune Epitopes
  ☆13Updated 2 months ago
• Edinburgh-Genome-Foundry / BandWitch
  💫 Computer-aided DNA assembly validation and identification from restriction digests.
  ☆15Updated this week
• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆23Updated 2 months ago
• openvax / pepdata
  Python interface to amino acid properties and IEDB
  ☆56Updated 6 months ago
• AstraZeneca / detectIS
  A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data
  ☆12Updated last year
• krassowski / multi-omics-state-of-the-field
  Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"
  ☆26Updated last year
• Murali-group / PathLinker
  Connect the dots in networks.
  ☆18Updated 4 years ago
• slimsuite / SLiMSuite
  Open source short linear motif discovery and sequence analysis
  ☆23Updated 6 months ago