johnbachman / famplex
Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.
☆12Updated 4 years ago
Alternatives and similar repositories for famplex:
Users that are interested in famplex are comparing it to the libraries listed below
- LLM-based gene function enrichment tool☆11Updated 2 months ago
- A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)☆21Updated 3 years ago
- A Python package for benchmarking pathway database with functional enrichment and classification methods☆13Updated 4 years ago
- ☆18Updated 10 months ago
- A project to capture biological pathway data from academic papers☆29Updated last month
- Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing☆32Updated 7 years ago
- Harmonizing pathway databases using Biological Expression Language (BEL)☆19Updated 10 months ago
- 🪝 What's the latest version for each database?☆27Updated this week
- Draft cell type definitions from data - candidates for inclusion in CL☆12Updated 3 months ago
- Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"☆26Updated last year
- A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.☆32Updated 9 months ago
- A metadata commons to store research software metadata☆41Updated this week
- A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.☆20Updated last year
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- PyBioPAX: A python implementation of the BioPAX object model☆24Updated 11 months ago
- Literature mining for T cell relations☆23Updated 2 years ago
- Project code for BioHackathon Europe 2023.☆18Updated 8 months ago
- ☆11Updated 5 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- The Complete Python Antibody Library☆22Updated this week
- Map your disease and phenotype terms to the Open Targets platform ontology☆21Updated 5 months ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago
- ☆24Updated 4 years ago
- ☆21Updated 5 months ago
- 🗺️ Community curated and predicted equivalences and related mappings between named biological entities that are not available from prima…☆53Updated last week
- Cataloging pharmacotherapies in clinical trial from ClinicalTrials.gov☆27Updated 8 years ago
- A Bio2BEL package for DrugBank (https://www.drugbank.ca)☆9Updated 4 years ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Updated this week
- ☆10Updated 3 years ago
- BioThings API framework - Making high-performance API for biological annotation data☆46Updated this week