A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.
☆13Mar 13, 2019Updated 7 years ago
Alternatives and similar repositories for mirlo
Users that are interested in mirlo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A couple of tools I find indispensable for post orthomcl down-stream analysis.☆11Oct 2, 2019Updated 6 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20May 31, 2020Updated 6 years ago
- Segmental duplication detection tool☆15Feb 7, 2023Updated 3 years ago
- This is a pipeline describing how I assembled the complete genome of the freshwater angelfish, Pterophylllum scalare.☆14Oct 21, 2022Updated 3 years ago
- Parallel implementation of OrthoMCL☆21Aug 26, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆24May 19, 2020Updated 6 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆60Sep 5, 2017Updated 8 years ago
- Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.☆12Mar 9, 2021Updated 5 years ago
- This is code for running Orthofinder -> PAML☆13Jul 27, 2016Updated 10 years ago
- profile the repeat landscape in a genome☆16Sep 9, 2014Updated 11 years ago
- A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.☆28Feb 14, 2023Updated 3 years ago
- ☆11Apr 20, 2018Updated 8 years ago
- MGnify API toolkit☆18Jan 31, 2025Updated last year
- De-novo Assembly Structural Variant Caller☆13Sep 15, 2016Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Minhash and maxhash library in Python, combining flexibility, expressivity, and performance.☆23Dec 14, 2024Updated last year
- Paint genomes with taxa-specific k-mer probabilities☆16Apr 4, 2022Updated 4 years ago
- Efficient handling of FASTQ files from Python☆51Nov 28, 2025Updated 9 months ago
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Apr 1, 2023Updated 3 years ago
- Docker image of JBrowse Genome Browser☆15Apr 12, 2021Updated 5 years ago
- ☆25Feb 24, 2026Updated 6 months ago
- scripts to parse and analyse MCScanX collinearity output☆32Mar 3, 2020Updated 6 years ago
- A textbook on population genetics☆18Aug 18, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- QC cutoffs for different genomes.☆18May 28, 2026Updated 3 months ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Jan 4, 2021Updated 5 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆24Dec 1, 2022Updated 3 years ago
- Italian Covid-19 vaccination campaign data☆16Jun 1, 2021Updated 5 years ago
- Scripts to calculate population genetics statistics☆55Jul 20, 2018Updated 8 years ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 5 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Jul 12, 2021Updated 5 years ago
- plot Multiple Sequence Alignment(MSA) of Clustal by python package☆15Mar 14, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Probabilistic Inference of Molecular Evolution☆10Sep 6, 2021Updated 4 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆80Aug 30, 2016Updated 10 years ago
- Computational method for Comparative ReConstruction of genome-scale metabolic networks☆22Mar 23, 2018Updated 8 years ago
- A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.☆22Jul 22, 2023Updated 3 years ago
- A python implementation of "Risk of non Adaptedness" method (with a bit of R too!)☆10Aug 2, 2021Updated 5 years ago
- A comparative genome scaffolding tool☆16Oct 6, 2018Updated 7 years ago
- AUGUSTUS v3.2.1 for installation on Mac OS X☆12May 21, 2018Updated 8 years ago