biocore / Platypus-ConquistadorLinks
Confirming specific taxonomic groups within your samples.
☆19Updated 5 years ago
Alternatives and similar repositories for Platypus-Conquistador
Users that are interested in Platypus-Conquistador are comparing it to the libraries listed below
Sorting:
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- Annotate your metagenome assemblies☆11Updated 7 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- Locus and lineage tests for bacterial GWAS☆28Updated 8 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 8 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated last year
- Merge transcriptome assemblies☆31Updated 9 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated 2 years ago
- annotation pipeline for microbial genomes and metagenomes☆18Updated 7 years ago
- ☆14Updated last month
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Updated 7 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- blast, shmlast☆21Updated 5 years ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- Pipeline to generate NGS reads from a phylogeny☆39Updated 3 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Interactive tools for metagenome visualization and binning in R☆27Updated 7 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- Metagenomic binning suite☆29Updated 3 years ago
- Tools for extracting individual genomes from metagenomes☆16Updated 2 years ago
- Simulate metagenomic short reads from one or more populations.☆26Updated 11 months ago
- Using kallisto for metagenomic analysis☆49Updated 9 years ago
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 7 years ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆23Updated 2 years ago