biocore / Platypus-Conquistador
Confirming specific taxonomic groups within your samples.
☆19Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for Platypus-Conquistador
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆23Updated 3 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 7 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 5 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆19Updated 8 years ago
- Using kallisto for metagenomic analysis☆50Updated 7 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆28Updated 6 years ago
- Merge transcriptome assemblies☆30Updated 8 years ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆37Updated last year
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 4 months ago
- Locus and lineage tests for bacterial GWAS☆30Updated 7 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 4 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 7 months ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆29Updated 3 years ago
- ☆23Updated 6 years ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆24Updated last year
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆45Updated 2 years ago
- blast, shmlast☆21Updated 4 years ago
- ☆19Updated 7 years ago
- Detect contigs of complete circular genomes☆21Updated 5 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 2 years ago
- k-SLAM ultra fast alignment and taxonomic classification of metagenomic datasets☆23Updated 5 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 6 years ago
- Annotate your metagenome assemblies☆11Updated 6 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆24Updated 5 months ago
- annotation pipeline for microbial genomes and metagenomes☆18Updated 6 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Updated 2 years ago