Alternatives and similar repositories for docker-jbrowse

Users that are interested in docker-jbrowse are comparing it to the libraries listed below

• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆29Updated 10 months ago
• appris / appris
  Annotating principal splice isoforms
  ☆14Updated 8 months ago
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆31Updated last year
• drio / bio.brew
  A tiny package manager for crucial unix and bioinformatics tools
  ☆27Updated 10 years ago
• GMOD / jbrowse-jupyter
  A python package for showing JBrowse views
  ☆25Updated last year
• fikipollo / paintomics3
  Integrative visualization of multiple omic datasets onto KEGG pathways.
  ☆11Updated 3 years ago
• SexChrLab / XYalign
  ☆25Updated 5 years ago
• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆21Updated 3 years ago
• nickloman / poredb
  ☆19Updated 8 years ago
• wassermanlab / Variant_catalogue_pipeline
  Variant catalogue pipeline
  ☆25Updated last month
• ChristopherWilks / snaptron
  fast webservices based query tool for large sets of genomic features
  ☆25Updated last month
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• nygenome / Lancet2
  v2.x of the microassembly based somatic variant caller
  ☆24Updated last week
• gmcvicker / draw_genes
  A flexible python program for generating figures from regions of the genome.
  ☆13Updated 6 years ago
• quinlan-lab / bedqc
  BED QC tool (in the making)
  ☆16Updated 2 years ago
• COMBINE-lab / SalmonTools
  Useful tools for working with Salmon output
  ☆38Updated 5 years ago
• bionitio-team / bionitio-python
  Demonstrating best practices for bioinformatics command line tools
  ☆26Updated 4 years ago
• apierleoni / BioGraPy
  Biological Graphic tool in Python
  ☆34Updated 5 years ago
• goeckslab / isoseq-browser
  ☆13Updated 7 years ago
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago
• robsyme / nf-repeatmasking
  Nextflow workflow for automatic repeat detection, classification and masking
  ☆13Updated 7 years ago
• dcjones / isolator
  Rapid and robust analysis of RNA-Seq experiments.
  ☆32Updated 9 years ago
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆22Updated 6 years ago
• COMBINE-lab / wasabi
  Prepare Sailfish and Salmon output for downstream analysis
  ☆43Updated 6 years ago
• gzhmat / ShinyCNV
  a Shiny/R application to view and annotate copy number variations
  ☆28Updated 2 years ago
• brentp / cigar
  simple library for dealing with SAM cigar strings
  ☆41Updated 4 years ago
• deweylab / MetaSRA-pipeline
  MetaSRA: normalized sample-specific metadata for the Sequence Read Archive
  ☆43Updated 3 weeks ago
• bcbio / bcbio.variation.recall
  Parallel merging, squaring off and ensemble calling for genomic variants
  ☆20Updated 5 years ago
• cbcrg / kallisto-nf
  A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools
  ☆23Updated 7 years ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆32Updated last week