acg-team / tral
Tandem Repeat Annotation Library
☆24Updated last year
Related projects ⓘ
Alternatives and complementary repositories for tral
- A toolkit for annotation of transposable element families from unassembled sequence reads☆31Updated last year
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆52Updated last week
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆54Updated 7 years ago
- orthology assignment using phylogenetic and network analyses☆45Updated last month
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- Detection of incorrectly labeled sequences across kingdoms☆80Updated 2 years ago
- CoGe (Comparative Genomics) Platform☆44Updated 2 years ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆65Updated 3 weeks ago
- Error correction for Illumina RNA-seq reads☆63Updated 8 months ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆55Updated 7 years ago
- Maximum likelihood demultiplexing☆46Updated last year
- REINDEER REad Index for abuNDancE quERy☆57Updated 3 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆46Updated 3 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆48Updated 6 years ago
- Find Unique genomic Regions☆29Updated this week
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- http://www.combio.pl/alfree☆22Updated 2 years ago
- PHAST☆68Updated this week
- Merging paired-end reads and removing adapters☆45Updated 4 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆29Updated last year
- GSAlign: an ultra-fast sequence alignment algorithm for intra-species genome comparison☆53Updated 6 months ago
- 10x Genomics Reads Simulator☆45Updated 10 months ago
- Fully automated generation of UCSC assembly hubs☆34Updated last month
- Query language for filtering SAM/BAM reads☆31Updated last month
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 3 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 3 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago