acg-team / tralLinks
Tandem Repeat Annotation Library
☆25Updated 2 years ago
Alternatives and similar repositories for tral
Users that are interested in tral are comparing it to the libraries listed below
Sorting:
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆53Updated 7 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49Updated 4 years ago
- Fully automated generation of UCSC assembly hubs☆35Updated last year
- Browser based application for viewing bam alignments☆56Updated 8 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆26Updated 3 years ago
- A versatile toolkit for k-mers with taxonomic information☆80Updated 2 months ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- Convert genbank files to a swath of other formats☆22Updated 2 years ago
- Python3 module for running MUMmer and reading the output☆33Updated 7 months ago
- A toolkit for performing set operations - union, intersection and complement - on k-mer lists.☆34Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Analysis toolkit and programming library for k-mer profiles☆31Updated 4 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- Flash2 has some improvements from flash_1 including new logic from innie and outie overlaps as well as some initial steps for flash for a…☆50Updated 7 years ago
- Merge transcriptome assemblies☆31Updated 9 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆34Updated 2 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 3 months ago
- Ultra-efficient taxonomic mapping of NGS data☆51Updated 4 years ago
- 10x Genomics Reads Simulator☆46Updated last year
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 2 months ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆59Updated 8 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Updated 6 years ago