Tandem Repeat Annotation Library
☆25Mar 30, 2023Updated 2 years ago
Alternatives and similar repositories for tral
Users that are interested in tral are comparing it to the libraries listed below
Sorting:
- ☆12Dec 6, 2023Updated 2 years ago
- Stupid Simple Structural Variant View☆25Nov 21, 2016Updated 9 years ago
- Shape analysis of high-throughput data☆19Feb 24, 2016Updated 10 years ago
- ☆15Mar 7, 2016Updated 9 years ago
- Software package for estimating fine-scale recombination rate.☆17Jun 8, 2021Updated 4 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55May 17, 2022Updated 3 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19May 13, 2016Updated 9 years ago
- Tool for finding matches to degenerate sequence motifs in FASTA files.☆13Mar 11, 2024Updated last year
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- Code for Shipman et al. 2017☆13Jul 12, 2017Updated 8 years ago
- Detecting NUMTs from WGS☆13Nov 19, 2023Updated 2 years ago
- Homologizer: phasing gene copies into polyploid subgenomes☆11Feb 3, 2026Updated last month
- Telomere compliment tools☆22Nov 17, 2025Updated 3 months ago
- ☆13Nov 15, 2017Updated 8 years ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆28Jun 1, 2017Updated 8 years ago
- CARE: Context-Aware Read Error correction for Illumina reads☆21Nov 1, 2023Updated 2 years ago
- A collection of bioinformatics file format specimens to test against☆47Jan 7, 2020Updated 6 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆62Updated this week
- Rapid discovery of reciprocal best blast pairs.☆10Nov 9, 2024Updated last year
- Modular cloning simulation with the MoClo framework in Python☆12May 3, 2022Updated 3 years ago
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- A program for divvying or partially filtering multiple sequence alignments☆27Oct 14, 2019Updated 6 years ago
- use paired-end transcriptome reads to scaffold genomes☆11May 30, 2019Updated 6 years ago
- Calculate Hybrid Index and Heterozygosity from SNP data☆15Sep 2, 2025Updated 6 months ago
- ☆16Aug 8, 2025Updated 6 months ago
- DEPRECATED: Store and query public TCGA data☆11Sep 15, 2016Updated 9 years ago
- Tumour Heterogeneity and Intercellular Networks of Nasopharyngeal Carcinoma at Single Cell Resolution☆13Mar 1, 2023Updated 3 years ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 3 years ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated last year
- High-performance error correction for Illumina resequencing data☆74May 31, 2016Updated 9 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49May 7, 2019Updated 6 years ago
- QC report generator for Hi-C pairs file☆13Sep 14, 2020Updated 5 years ago
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆13Nov 9, 2024Updated last year
- A Generalizable Model for 3D Chromosome Reconstruction Using Graph Convolutional Neural Networks☆18Sep 9, 2021Updated 4 years ago
- ☆16Apr 25, 2019Updated 6 years ago
- GRAbB (Genome Region Assembly by Baiting) is a program designed to assemble selected regions of the genome or transcriptome using referen…☆13Nov 6, 2020Updated 5 years ago
- Defunct. Use https://github.com/Linuxbrew/docker☆14Jun 24, 2016Updated 9 years ago
- Tools for generating and decoding error-correcting DNA barcodes☆15Feb 15, 2022Updated 4 years ago
- Efficient handling of FASTQ files from Python☆51Nov 28, 2025Updated 3 months ago