mills-lab / svelter
Approach to identify simple and complex structural genomic rearrangements using a randomized approach
☆21Updated 6 years ago
Alternatives and similar repositories for svelter:
Users that are interested in svelter are comparing it to the libraries listed below
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- Structural variant caller☆54Updated 3 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Structural variant (SV) analysis tools☆35Updated 7 months ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- ☆51Updated 5 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Method to optimally select samples for validation and resequencing☆27Updated 3 years ago
- ☆79Updated 9 months ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆54Updated last year
- ☆35Updated 5 years ago
- UCSC Nanopore☆43Updated 5 years ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- StrVCTVRE, a structural variant classifier for exonic deletions and duplications☆18Updated last year
- ☆29Updated 4 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆48Updated 4 years ago