mills-lab / svelter
Approach to identify simple and complex structural genomic rearrangements using a randomized approach
☆20Updated 6 years ago
Related projects ⓘ
Alternatives and complementary repositories for svelter
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- heuristics to merge structural variant calls in VCF format.☆35Updated 8 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆54Updated last year
- Genome-wide reconstruction of complex structural variants☆39Updated 2 years ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- PopSTR - A Population based microsatellite genotyper☆32Updated last year
- ☆51Updated 5 years ago
- Structural variant (SV) analysis tools☆36Updated 4 months ago
- Structural variant caller☆54Updated 2 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- Structural Variant Prediction Viewer☆31Updated 7 years ago
- Graphite - Graph-based variant adjudication☆28Updated 3 years ago
- Evaluation of phasing performance☆21Updated 6 years ago
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆29Updated last year
- SV genotyping with long reads☆40Updated last year
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 4 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 5 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆54Updated this week
- Pipeline for structural variation detection in cohorts☆48Updated 3 years ago
- Structural variant merging tool☆45Updated 2 months ago
- MarginPolish: Graph based assembly polishing☆45Updated 3 years ago
- ☆79Updated 6 months ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆65Updated 2 years ago