mills-lab / svelterLinks
Approach to identify simple and complex structural genomic rearrangements using a randomized approach
☆21Updated 6 years ago
Alternatives and similar repositories for svelter
Users that are interested in svelter are comparing it to the libraries listed below
Sorting:
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated 2 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- ☆51Updated 6 years ago
- Specifications for PacBio® native file formats☆31Updated 9 months ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated last year
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- PopSTR - A Population based microsatellite genotyper☆33Updated last year
- 10x Genomics Reads Simulator☆45Updated last year
- Exploration of controlled loss of quality values for compressing CRAM files☆35Updated 2 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Adapters for trimming☆30Updated 6 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated this week
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆48Updated 7 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- ☆49Updated 2 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Structural variant (SV) analysis tools☆36Updated last year
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago