biocore / micronotaLinks
annotation pipeline for microbial genomes and metagenomes
☆18Updated 7 years ago
Alternatives and similar repositories for micronota
Users that are interested in micronota are comparing it to the libraries listed below
Sorting:
- ☆36Updated 3 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 5 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- Strain Prediction and Analysis with Representative SEquence☆19Updated 6 months ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 5 months ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆39Updated last week
- Bacterial genomes finishing tool for structural insights on draft genomes☆24Updated last year
- Gene-flank analysis tool☆27Updated 6 months ago
- ☆23Updated 6 years ago
- Annotate sequences from BLAST against KEGG DB with KO numbers and summarize them in KEGG modules.☆22Updated 6 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- ☆52Updated 4 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- Visualize whole genome alignments as linear maps☆73Updated 9 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- Split Kmer Analysis☆65Updated 3 years ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆37Updated last year
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- Calculates the lowest common ancestors of each query sequence in a Blast result☆31Updated 7 years ago
- Database of genomes integrated from the gut microbiome and other environments☆45Updated 2 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- Intra-species bacterial contamination detection☆25Updated 4 months ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆24Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- De novo Extraction of Strains from MetAgeNomes☆69Updated 5 years ago
- StrainFinder☆27Updated 6 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆53Updated 2 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago