openvax / pepnet
Neural networks for amino acid sequences
☆20Updated 7 years ago
Alternatives and similar repositories for pepnet:
Users that are interested in pepnet are comparing it to the libraries listed below
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 2 years ago
- ☆23Updated last year
- A platform to do RNA science☆27Updated 4 years ago
- a collection of colabs useful for molecular biology☆31Updated last year
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 8 years ago
- chemmodlab: A Cheminformatics Modeling Laboratory for Fitting and Assessing Machine Learning Models☆15Updated last year
- Python package and command line tool for epitope prediction☆51Updated 7 months ago
- ☆13Updated 5 years ago
- Printing text using protein structures☆13Updated 3 years ago
- The Complete Python Antibody Library☆21Updated 7 months ago
- Methods for mapping proteomics data on 3D protein structure.☆15Updated 5 years ago
- ☆28Updated 10 months ago
- PDNET: A fully open-source framework for deep learning protein real-valued distances☆35Updated 3 years ago
- Use AlphaFold by Deep Mind in Batch Mode + Multiprocessing☆23Updated 3 years ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆37Updated last year
- Non-sequential structural alignment program for protein structure☆19Updated 5 months ago
- ☆30Updated 4 years ago
- Visually explore covariation in protein families☆37Updated 5 years ago
- Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape☆11Updated 2 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆28Updated last year
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- Python package for peptide sequence generation, peptide descriptor calculation and sequence analysis.☆57Updated last week
- ☆20Updated 3 years ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 6 years ago
- A web app to convert a PyMOL PSE file or PDB file to a easy to implement NGL.js view that can be implemented easily on any site☆12Updated 3 years ago
- ☆36Updated 6 years ago
- Peptide library design☆22Updated 4 years ago
- Python package to manage protein structures and their annotations☆42Updated last year
- Code associated with "Biophysical prediction of protein-peptide interactions and signaling networks using machine learning."☆71Updated 11 months ago
- Prediction of protein substitution impact using a directional substitution matrix and homolog alignments☆12Updated 3 years ago