ncbi-gpipe / pgap
(Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:
☆16Updated 6 years ago
Alternatives and similar repositories for pgap:
Users that are interested in pgap are comparing it to the libraries listed below
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 3 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 2 years ago
- ☆14Updated last year
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Read contamination removal☆24Updated last year
- Find Unique genomic Regions☆29Updated 2 months ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 9 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 4 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆14Updated 3 years ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- ☆19Updated last year
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 2 years ago
- ☆19Updated 8 years ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆24Updated 5 months ago
- transposable element typing pipeline☆17Updated last year
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Annotate your metagenome assemblies☆11Updated 6 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 3 months ago
- A method of assessing sequence complexity based on kmer frequencies☆31Updated 6 years ago
- comparative genome dot plot viewer☆9Updated 5 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 7 years ago
- Bioinformatics pipeline for nanopore sequencing data☆10Updated 6 years ago
- Read nanopore sequence reads in real-time☆14Updated 8 years ago