ncbi-gpipe / pgapLinks
(Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:
☆16Updated 7 years ago
Alternatives and similar repositories for pgap
Users that are interested in pgap are comparing it to the libraries listed below
Sorting:
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Read contamination removal☆25Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Indel-aware consensus for aligned BAM☆21Updated last month
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 4 years ago
- Find Unique genomic Regions☆30Updated 3 weeks ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 9 months ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Parallel implementation of OrthoMCL☆21Updated 3 years ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- ELECTOR: EvaLuator of Error Correction Tools for lOng Reads☆15Updated 4 years ago
- This repository is deprecated, please use the link to the right.☆23Updated 6 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 8 months ago
- ☆20Updated last year
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆34Updated 2 months ago
- Mapping-free variant caller for short-read Illumina data☆19Updated 5 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last week
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Updated 6 years ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Updated 3 years ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆11Updated 9 months ago