ncbi-gpipe / pgap
(Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:
☆15Updated 6 years ago
Alternatives and similar repositories for pgap:
Users that are interested in pgap are comparing it to the libraries listed below
- Read contamination removal☆24Updated last year
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 3 years ago
- ☆19Updated 7 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- Bioinformatics pipeline for nanopore sequencing data☆10Updated 6 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 4 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- De novo VIral Genome Annotator☆21Updated 5 months ago
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- ☆14Updated last year
- Find Unique genomic Regions☆29Updated last month
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- A method of assessing sequence complexity based on kmer frequencies☆31Updated 6 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 2 months ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 6 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 2 years ago
- transposable element typing pipeline☆17Updated 11 months ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 6 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated last year
- blast, shmlast☆21Updated 4 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 7 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- CAMITAX: Taxon labels for microbial genomes☆29Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆27Updated last month