(Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:
☆16Sep 7, 2018Updated 7 years ago
Alternatives and similar repositories for pgap
Users that are interested in pgap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A list of weak Bacterial assemblies in GenBank☆18Aug 3, 2017Updated 8 years ago
- Generate mutated sequence files from a reference genome.☆11Jun 12, 2026Updated last month
- Pipeline to generate NGS reads from a phylogeny☆39Sep 13, 2022Updated 3 years ago
- A small library for ranges/intervals, for use with genomic data.☆17Nov 27, 2012Updated 13 years ago
- kaamer - protein identification based on amino acid kmers☆11Mar 7, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A python framework for inferring demography from tracts of identity by state as reported in PLoS Genetics by Harris and Nielsen (2013)☆15Aug 1, 2013Updated 12 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Mar 7, 2019Updated 7 years ago
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- A Swiss army knife for genome projects☆15Aug 13, 2013Updated 12 years ago
- Create and maintain phylogenetic "reference packages" of biological sequences.☆22May 27, 2026Updated last month
- Fast k-mer based tool for multi locus sequence typing (MLST)☆47Sep 3, 2020Updated 5 years ago
- Using kallisto for metagenomic analysis☆49Jan 12, 2017Updated 9 years ago
- EMIRGE reconstructs full length ribosomal genes from short read sequencing data.☆38Sep 15, 2023Updated 2 years ago
- Pathogenicity prediction of bacterial genomes☆17Jun 27, 2018Updated 8 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories☆40Feb 20, 2026Updated 5 months ago
- Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint.☆12May 22, 2017Updated 9 years ago
- De novo assembly of nanopore reads using nextflow☆20Aug 5, 2020Updated 5 years ago
- Bluetooth Internet Adapter is an idea for a solution allowing Personal Computers to access Internet content via Bluetooth connection to a…☆15Apr 12, 2010Updated 16 years ago
- Whole genome focused array SNP typer☆14Feb 2, 2026Updated 5 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆50Jan 14, 2026Updated 6 months ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Jul 12, 2021Updated 5 years ago
- REcombination BARcode detector.☆16Apr 2, 2024Updated 2 years ago
- a collection of scripts for organising bacterial genomes by species☆80Mar 18, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50May 18, 2026Updated 2 months ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆47Feb 17, 2021Updated 5 years ago
- Classify sequencing reads using MinHash.☆48Apr 6, 2020Updated 6 years ago
- A tutorial for learning de novo assembly☆33Dec 8, 2011Updated 14 years ago
- ⛔️ DEPRECATED Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology☆44Mar 27, 2026Updated 3 months ago
- ☆16Oct 2, 2019Updated 6 years ago
- Make and use nested directory trees corresponding to combinatorial choices of parameters☆20Apr 23, 2017Updated 9 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Jun 11, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python library that facilitates opening, reading, and writing files (and file-like entities like URLs and streams) agnostic of compressio…☆24Jul 5, 2026Updated 2 weeks ago
- Neptune: Genomic Signature Discovery☆21May 1, 2026Updated 2 months ago
- Report salient qPCR primer/probe or immune epitope mismatches info against a set of pathogen isolate genomes☆16Mar 11, 2025Updated last year
- The MLST pipeline developed by the PathOGiST research group☆38Nov 29, 2023Updated 2 years ago
- Manipulate FASTA files☆29Aug 26, 2014Updated 11 years ago
- An MPI Toolkit for large-scale genomic analysis☆16Feb 29, 2016Updated 10 years ago
- Nextera Long Mate Pair analysis and processing tool☆18Mar 26, 2020Updated 6 years ago