camillescott / shmlast
blast, shmlast
☆22Updated 4 years ago
Alternatives and similar repositories for shmlast:
Users that are interested in shmlast are comparing it to the libraries listed below
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 10 months ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- Assembly and scaffolding of bacterial genomes in real time using MinION-sequencing☆9Updated 7 years ago
- ☆19Updated 8 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 3 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last year
- Pipeline for poreathon☆14Updated 10 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Updated 6 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 4 months ago
- Light version blobtools package - NO LONGER MAINTAINED! DO NOT USE!☆8Updated 9 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- ☆14Updated 9 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Indel-aware consensus for aligned BAM☆21Updated 3 weeks ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 6 years ago
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 4 years ago
- Pipeline for Evaluating Prokaryotic References☆11Updated 8 years ago
- ☆16Updated 7 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- A list of weak Bacterial assemblies in GenBank☆18Updated 7 years ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Updated 6 years ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16Updated 10 months ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Paint genomes with taxa-specific k-mer probabilities☆8Updated 7 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago