blast, shmlast
☆21Oct 5, 2020Updated 6 years ago
Alternatives and similar repositories for shmlast
Users that are interested in shmlast are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Conditional Reciprocal Best Blast☆44Mar 22, 2017Updated 9 years ago
- Automated optimisation of de-novo transcriptome assembly☆25Nov 11, 2015Updated 10 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆12Apr 13, 2026Updated 6 months ago
- A Python wrapper for the bbhash library for Minimal Perfect Hashing☆18Oct 26, 2025Updated last year
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…☆11Sep 22, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- An MPI Toolkit for large-scale genomic analysis☆16Feb 29, 2016Updated 10 years ago
- in silico plasmid extraction☆13Sep 18, 2017Updated 9 years ago
- The Dagstuhl Format for Assembly☆13Oct 16, 2017Updated 9 years ago
- Understand your transcriptome assembly☆104Mar 22, 2024Updated 2 years ago
- A succinct colored dBG representation☆12Sep 11, 2018Updated 8 years ago
- just annotate it, dammit!☆94Aug 22, 2023Updated 3 years ago
- Clustering phylogenetic trees with python☆26Aug 14, 2024Updated 2 years ago
- ☆11Updated this week
- This repo is DEPRECATED. Please use minimap2, the successor of minimap.☆106Sep 20, 2017Updated 9 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Rapid and robust analysis of RNA-Seq experiments.☆32Apr 16, 2016Updated 10 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆38Nov 8, 2017Updated 8 years ago
- De novo Extraction of Strains from MetAgeNomes☆72Jun 17, 2020Updated 6 years ago
- cython wrapper to fastahack☆12Aug 27, 2013Updated 13 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆40Mar 14, 2023Updated 3 years ago
- Reciprocal Smallest Distance (RSD) is a pairwise orthology algorithm that uses global sequence alignment and maximum likelihood evolution…☆13Nov 22, 2014Updated 11 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated 2 years ago
- Response to blog post about Salmon☆37Sep 3, 2017Updated 9 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Jun 22, 2016Updated 10 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- De novo transcriptome assembler for short reads☆65May 31, 2026Updated 5 months ago
- Identifying ViRal and Circular content in metAgenomes☆14Dec 13, 2018Updated 7 years ago
- Paint genomes with taxa-specific k-mer probabilities☆16Apr 4, 2022Updated 4 years ago
- ☆10Sep 2, 2026Updated 2 months ago
- Manipulate FASTA files☆29Aug 26, 2014Updated 12 years ago
- seqqs is a C program/library for gathering quality statistics from sequencing data☆12May 12, 2014Updated 12 years ago
- Copy number estimation of highly duplicated sequences☆12Aug 15, 2017Updated 9 years ago
- Interactive tree visualizations in Python (powered by Vega).☆11Sep 26, 2019Updated 7 years ago
- A 3'-end adapter contaminant trimmer☆98Jan 23, 2018Updated 8 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆30Mar 31, 2015Updated 11 years ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆15Apr 14, 2023Updated 3 years ago
- My personal cheat sheets☆12Aug 28, 2026Updated 2 months ago
- A very simple BLAST filtering pipeline☆20Mar 28, 2014Updated 12 years ago
- Analysis of Ebola virus genomes☆17May 18, 2015Updated 11 years ago
- Streaming algorithm for computing kmer statistics for massive genomics datasets☆54Feb 18, 2020Updated 6 years ago
- A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).☆96Nov 24, 2025Updated 11 months ago