camillescott / shmlastLinks
blast, shmlast
☆22Updated 4 years ago
Alternatives and similar repositories for shmlast
Users that are interested in shmlast are comparing it to the libraries listed below
Sorting:
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Updated 6 years ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- ☆19Updated 8 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Assembly and scaffolding of bacterial genomes in real time using MinION-sequencing☆9Updated 7 years ago
- Light version blobtools package - NO LONGER MAINTAINED! DO NOT USE!☆8Updated 9 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 6 months ago
- Pipeline for Evaluating Prokaryotic References☆11Updated 8 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last month
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Mapping-free variant caller for short-read Illumina data☆19Updated 5 years ago
- Automated optimisation of de-novo transcriptome assembly☆25Updated 9 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Metagenomics-focused BAM file manipulation☆16Updated 5 years ago
- Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree☆25Updated 6 years ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Updated 6 years ago
- Pipeline for poreathon☆14Updated 10 years ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16Updated last year
- Annotate your metagenome assemblies☆11Updated 6 years ago
- ☆16Updated 7 years ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆15Updated 3 years ago
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Updated 8 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- reference free variant assembly☆33Updated last year