EdinburghGenomics / well_duplicates
localised duplicate detection on patterned flow cells
☆10Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for well_duplicates
- Mapping-free variant caller for short-read Illumina data☆18Updated 4 years ago
- blast, shmlast☆21Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 5 months ago
- ☆19Updated 7 years ago
- BED QC tool (in the making)☆15Updated 2 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆14Updated 3 years ago
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Updated 7 years ago
- Python scripts for Exploratory Data Analysis of Pacific Biosciences sequence data☆18Updated 10 years ago
- Pipeline for poreathon☆14Updated 9 years ago
- ☆12Updated 3 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Hidden Markov Model based Copy number caller☆20Updated last month
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last year
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Updated 5 years ago
- mreps: software for tandem repeat identification in DNA☆13Updated 5 years ago
- "The who the what the huh?" is our pipeline for converting bcl files to fastq and performing QC.☆11Updated 2 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 5 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- ☆11Updated last year
- vcf file manipulation☆20Updated 9 years ago
- Metagenomics-focused BAM file manipulation☆16Updated 5 years ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 7 years ago
- reference free variant assembly☆32Updated last year
- Symmetric DUST for finding low-complexity regions in DNA sequences☆34Updated last year
- sort genomic data☆35Updated 4 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- Collection of utilities for working with PacBio-based assemblies☆13Updated last year
- Nanopore desc☆18Updated 8 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 5 years ago