Alternatives and similar repositories for saffrontree

Users that are interested in saffrontree are comparing it to the libraries listed below

• nf-core / kmermaid
  k-mer similarity analysis pipeline
  ☆22Updated last month
• mthon / mirlo
  A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.
  ☆13Updated 6 years ago
• CFIA-NCFAD / nf-flu
  Influenza genome analysis Nextflow workflow
  ☆22Updated last month
• bcthomas / pullseq
  Utility program for extracting sequences from a fasta/fastq file
  ☆36Updated 8 months ago
• salzberg-lab / bolotie
  SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity
  ☆13Updated 2 years ago
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆23Updated 11 months ago
• douglasgscofield / PacBio-utilities
  Collection of utilities for working with PacBio-based assemblies
  ☆13Updated 2 years ago
• jfass / apc
  (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join
  ☆11Updated 4 years ago
• atifrahman / SWALO
  Scaffolding with assembly likelihood optimization
  ☆22Updated 4 years ago
• maxemil / PhyloMagnet
  screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics
  ☆11Updated 4 years ago
• songlab-cal / swga2
  ☆17Updated 2 years ago
• COMBINE-lab / RapClust
  Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes
  ☆31Updated last year
• GuyBaele / SpreadGL
  Main development repository for SpreadGL
  ☆19Updated 11 months ago
• AnWiercze / NanopoReaTA
  Nanopore Real-Time Analysis Tool
  ☆15Updated 11 months ago
• gwct / referee
  Reference genome quality scores
  ☆21Updated 4 years ago
• liaoherui / VirStrain
  An RNA virus strain-level identification tool for short reads.
  ☆21Updated last year
• guigolab / FA-nf
  Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow
  ☆18Updated 3 years ago
• pantherdb / TreeGrafter
  TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.
  ☆11Updated last month
• GlobalPathogenAnalysisService / read-it-and-keep
  Read contamination removal
  ☆25Updated last year
• leoisl / bacterial_assembly_pipeline
  ☆11Updated last year
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆30Updated this week
• linsalrob / genbank_to
  Convert genbank files to a swath of other formats
  ☆18Updated last year
• alshai / rowbowt
  run-length BWT tools for genomic sequences
  ☆19Updated 3 years ago
• bcgsc / SSAKE
  🍶 Genome assembly with short sequence reads
  ☆25Updated last year
• Shamir-Lab / Faucet
  This is the codebase for Faucet, described in our manuscript: https://academic.oup.com/bioinformatics/article/34/1/147/4004871, by Roye R…
  ☆18Updated 8 years ago
• splicebox / PsiCLASS
  Simultaneous multi-sample transcript assembler for RNA-seq data
  ☆17Updated 8 months ago
• jmcbroome / autolin
  Repository containing a method for automatically identifying pathogen lineages from a phylogeny.
  ☆17Updated 2 years ago
• imgag / plasmIDent
  ☆15Updated last year
• TravisWheelerLab / BATH
  Better Alignments with Translated HMMER
  ☆21Updated last week
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆21Updated last year