SaffronTree: Reference free rapid phylogenetic tree construction from raw read data
☆25Jun 11, 2020Updated 5 years ago
Alternatives and similar repositories for saffrontree
Users that are interested in saffrontree are comparing it to the libraries listed below
Sorting:
- Tool for analysing viral diversity from High Throughput Sequencing☆12Nov 20, 2025Updated 3 months ago
- Fast implementation of the neighbour-joining phylogenetic inference method☆21May 23, 2020Updated 5 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Dec 5, 2018Updated 7 years ago
- Pipeline to generate NGS reads from a phylogeny☆39Sep 13, 2022Updated 3 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Jun 11, 2020Updated 5 years ago
- Process Illumina instrument data into SAM/BAM/CRAM files.☆10Jan 5, 2026Updated last month
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 4 years ago
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Oct 29, 2020Updated 5 years ago
- k-mer similarity analysis pipeline☆21Nov 20, 2025Updated 3 months ago
- Generate mutated sequence files from a reference genome.☆11Dec 26, 2022Updated 3 years ago
- localised duplicate detection on patterned flow cells☆10Feb 27, 2019Updated 7 years ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 3 years ago
- Forensic analysis tool useful in backwards computing information from next-generation sequencing data.