merenlab / reads-for-assemblyLinks
Simulate metagenomic short reads from one or more populations.
☆26Updated 4 months ago
Alternatives and similar repositories for reads-for-assembly
Users that are interested in reads-for-assembly are comparing it to the libraries listed below
Sorting:
- OPAL: Open-community Profiling Assessment tooL☆28Updated 4 months ago
- De novo Extraction of Strains from MetAgeNomes☆68Updated 4 years ago
- Estimate metagenomic coverage and sequence diversity☆53Updated 10 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- ☆52Updated 4 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 4 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- reference-based long read assemblies of bacterial genomes☆49Updated 3 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated 4 years ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- Gene-flank analysis tool☆27Updated 5 months ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- Strain Resolution ON Graphs☆47Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated last month
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆30Updated 4 years ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated last week
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- A set of programs for the taxonomic analysis of genetic sequences☆13Updated last year
- Split Kmer Analysis☆65Updated 3 years ago
- StrainFinder☆27Updated 6 years ago
- Toolkit for establishing, updating, and validating GTDB species clusters☆21Updated last month