olgabot / abi2fastqLinks
abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ
☆11Updated 8 years ago
Alternatives and similar repositories for abi2fastq
Users that are interested in abi2fastq are comparing it to the libraries listed below
Sorting:
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Updated 2 years ago
- 🍶 Genome assembly with short sequence reads☆25Updated 2 years ago
- MicrobeDirectory 2.0☆22Updated 5 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 7 years ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆35Updated last year
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Highly sensitive pathogen detection☆12Updated 5 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Find Unique genomic Regions☆32Updated last week
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated 5 months ago
- PiGx SARS-CoV-2 wastewater sequencing pipeline☆18Updated 2 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆25Updated 2 months ago
- Histosketching Using Little Kmers☆56Updated 2 years ago
- ☆10Updated 13 years ago
- Python CLI for alignment-free genomics.☆12Updated 2 weeks ago
- A message queue for genomic surveillance☆19Updated 4 years ago
- Build an index for your BAM Index (BAI)☆17Updated 10 years ago
- MineYourSymbiont : Targetted genome assembly for metagenomics pipeline.☆10Updated 2 years ago
- Tool for finding matches to degenerate sequence motifs in FASTA files.☆13Updated last year
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated 2 years ago
- PERF is an Exhaustive Repeat Finder☆34Updated 4 years ago
- Efficient handling of FASTQ files from Python☆51Updated last month
- annotation pipeline for microbial genomes and metagenomes☆18Updated 7 years ago
- Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.☆27Updated 4 years ago
- ☆36Updated 9 months ago
- Annotate sequences from BLAST against KEGG DB with KO numbers and summarize them in KEGG modules.☆22Updated 7 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- ☆18Updated 8 years ago