s-andrews / redotableLinks
A dotplot application for DNA/RNA sequence
☆11Updated 3 years ago
Alternatives and similar repositories for redotable
Users that are interested in redotable are comparing it to the libraries listed below
Sorting:
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- convert alignment bam to pairwise alignment or multiple sequence alignment (msa) at genome specific region☆13Updated last year
- Indel-aware consensus for aligned BAM☆21Updated 4 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 3 months ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 3 years ago
- A comparative genome scaffolding tool☆16Updated 7 years ago
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆13Updated 3 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Updated 6 years ago
- ☆45Updated last month
- ☆20Updated 2 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Updated this week
- Genomic Assemblies Merger for NGS☆26Updated 2 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated last year
- A Nextflow pipeline for running synteny analysis.☆16Updated 6 months ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- transposable element typing pipeline☆19Updated last year
- Reference bias measuring toolkit☆19Updated 8 months ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 7 years ago
- Parallel implementation of OrthoMCL☆21Updated 3 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 5 years ago
- Test sets and pipeline scripts for pan-genomic graph analysis☆17Updated 11 months ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- convert CHAIN format to PAF format☆15Updated last year
- De novo VIral Genome Annotator☆23Updated last year
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆21Updated 3 weeks ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 9 years ago
- Validate and edit small eukaryotic genome assemblies☆32Updated 2 years ago
- Suite of tools for pangenomics built using vg☆24Updated 5 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 2 months ago