pseudonymcp / keggmappingLinks
Annotate sequences from BLAST against KEGG DB with KO numbers and summarize them in KEGG modules.
☆22Updated 6 years ago
Alternatives and similar repositories for keggmapping
Users that are interested in keggmapping are comparing it to the libraries listed below
Sorting:
- Repository for scripts and resources used for metagenomics with Nanopore, PacBio and Illumina sequencing☆21Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆29Updated 9 months ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated this week
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆26Updated 3 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- viralComplete: BLAST-based viral completeness verification☆24Updated 4 years ago
- Find Unique genomic Regions☆30Updated this week
- MIRA sequence assembler☆30Updated 9 months ago
- ☆27Updated 5 years ago
- Phasing for metagenomics using PacBio long reads☆16Updated 4 years ago
- Protein Alignment and Detection Interface☆60Updated last year
- Convert genbank files to a swath of other formats☆20Updated 2 years ago
- Locus and lineage tests for bacterial GWAS☆29Updated 8 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆39Updated 2 months ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Updated last year
- ☆29Updated 4 years ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 9 months ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆43Updated 2 months ago
- Pangenome analysis of eukaryotes.☆19Updated 5 years ago
- Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.☆25Updated 7 years ago
- A package to annotate protein sequences☆60Updated 8 months ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 5 years ago
- SHOOT.bio - the phylogenetic search engine☆27Updated 2 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- Strain Resolution ON Graphs☆48Updated 2 years ago
- Scalable creating/updating of metagenome profiling databases☆62Updated 4 months ago