bede / tictax
Streaming sequence classification with web services ✓📌
☆19Updated 2 years ago
Alternatives and similar repositories for tictax:
Users that are interested in tictax are comparing it to the libraries listed below
- blast, shmlast☆21Updated 4 years ago
- A succinct colored dBG representation☆12Updated 6 years ago
- Universal K-mer Hitting Set library in Rust☆10Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 8 months ago
- ☆19Updated 7 years ago
- Assembly and scaffolding of bacterial genomes in real time using MinION-sequencing☆9Updated 6 years ago
- Build sourmash databases for genbank.☆12Updated last year
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Classify sequencing reads using MinHash.☆48Updated 4 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Updated 7 years ago
- The python binding for D4 format☆16Updated 3 years ago
- Indel-aware consensus for aligned BAM☆21Updated 2 months ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 2 years ago
- ☆14Updated 9 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- reference free variant assembly☆33Updated last year
- Pipeline for poreathon☆14Updated 10 years ago
- Mapping-free variant caller for short-read Illumina data☆18Updated 4 years ago
- SeqOthello supports fast coverage query and containment query.☆12Updated 5 years ago
- Sequence Bloom Trees with All/Some split☆11Updated 6 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Real-time species-typing visualisation for nanopore data.☆13Updated last year
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 3 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Updated 6 years ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆15Updated 6 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Rapid competitive read demulitplexer. Made with tries.☆24Updated last year
- Hidden Markov Model based Copy number caller☆20Updated 3 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago