bede / tictaxLinks
Streaming sequence classification with web services ✓📌
☆19Updated 3 years ago
Alternatives and similar repositories for tictax
Users that are interested in tictax are comparing it to the libraries listed below
Sorting:
- reference free variant assembly☆34Updated 2 years ago
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 8 years ago
- ☆13Updated 10 years ago
- ☆18Updated 7 years ago
- blast, shmlast☆21Updated 5 years ago
- The python binding for D4 format☆16Updated 4 years ago
- k-mer Counter based on Multiple Burst Trees (multi-threaded)☆13Updated 9 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Updated 8 years ago
- Indel-aware consensus for aligned BAM☆21Updated 5 months ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 3 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- de Bruijn Graph REAd mapping Tool☆14Updated 8 years ago
- Reference-free variant discovery in large eukaryotic genomes☆42Updated 4 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- Johns Hopkins University student-led genomics paper discussion group☆13Updated 5 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Hidden Markov Model based Copy number caller☆20Updated 2 months ago
- A succinct colored dBG representation☆12Updated 7 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated 2 years ago
- Index and query k-mer matrices in BGZF☆12Updated 7 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 6 years ago
- Python bindings to minimap2☆16Updated 8 years ago
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 3 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 7 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 4 months ago
- Real-time species-typing visualisation for nanopore data.☆13Updated 2 years ago