resendislab / cordaLinks
An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al
☆25Updated last year
Alternatives and similar repositories for corda
Users that are interested in corda are comparing it to the libraries listed below
Sorting:
- CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway inf…☆15Updated this week
- Metabolic Engineering Workbench☆40Updated last year
- StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy☆43Updated 5 months ago
- ☆22Updated 4 years ago
- Natural Product Discovery tools -- a toolkit containing various pipelines for in silico analysis of natural product mass spectrometry da…☆28Updated 2 years ago
- Python interface to amino acid properties and IEDB☆57Updated 10 months ago
- ☆24Updated 2 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- cameo - computer aided metabolic engineering & optimization☆118Updated 2 years ago
- Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.☆33Updated 4 months ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 3 years ago
- Python package for building and analyzing models using ModelSEED☆23Updated 3 months ago
- DeepMetabolism is a deep learning algorithm to predict phenotype from genome sequencing☆31Updated 8 years ago
- Repository of tutorials for The COBRA Toolbox☆22Updated this week
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- Absolute quantification package based on quantms.io☆14Updated 2 months ago
- A high-fidelity E. coli RNA-seq compendium☆32Updated 4 years ago
- A tutorial on cobrapy☆10Updated 2 years ago
- 💫 Computer-aided DNA assembly validation and identification from restriction digests.☆16Updated 2 months ago
- Analysis of ensembles of metabolic network reconstructions☆21Updated 2 years ago
- Dashboard for analysis of liquid chromatography (tandem) mass spectrometry data.☆32Updated this week
- D3.js based visualizations of cobrapy metabolic models☆47Updated 5 years ago
- Hierarchical orderings for mass spectrometry data. Canonically pronounced "chemis-tree".☆31Updated 2 years ago
- Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…☆10Updated last year
- Curation and analysis of metabolic models☆35Updated 2 years ago
- Quickly find and score consensus between metabolite identifications and gene annotations☆18Updated 8 months ago
- Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data☆20Updated 2 years ago
- Explore biomolecular pathways in Reactome from the command-line or a Python script☆24Updated 9 months ago
- ReFramed: metabolic modeling package☆59Updated 3 months ago
- framed: a metabolic modeling package for python☆26Updated 5 years ago