Computational method for Comparative ReConstruction of genome-scale metabolic networks
☆21Mar 23, 2018Updated 7 years ago
Alternatives and similar repositories for CoReCo
Users that are interested in CoReCo are comparing it to the libraries listed below
Sorting:
- a Graph database and R package for omic data integration☆19Oct 28, 2016Updated 9 years ago
- Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.☆12Mar 9, 2021Updated 5 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 7 years ago
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- Docker image of JBrowse Genome Browser☆15Apr 12, 2021Updated 4 years ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆23Jan 28, 2025Updated last year
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- Package to create MOVIE Plots☆12Oct 31, 2019Updated 6 years ago
- Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.☆29Jan 16, 2026Updated 2 months ago
- A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.☆21Jul 22, 2023Updated 2 years ago
- Curation and analysis of metabolic models☆36Aug 8, 2023Updated 2 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆17Feb 17, 2026Updated last month
- abi2fastq is a small utility to convert Sanger sequencing reads in .abi (applied biosystems) format to FASTQ☆11Sep 19, 2017Updated 8 years ago
- Annotate sequences from BLAST against KEGG DB with KO numbers and summarize them in KEGG modules.☆22Dec 27, 2018Updated 7 years ago
- Gene Family Annotation Workflow☆11Mar 26, 2024Updated last year
- A flexible python program for generating figures from regions of the genome.☆13Apr 6, 2019Updated 6 years ago
- 16S rRNA database☆13Nov 29, 2018Updated 7 years ago
- Profiler for metagenomics based on NGLess☆13Feb 22, 2024Updated 2 years ago
- The Microbiome Interpretable Temporal Rule Engine☆46May 26, 2021Updated 4 years ago
- Train word2vec on Pubmed data, compare 2 GO terms, compare 2 genes.☆12Apr 7, 2017Updated 8 years ago
- ☆19Oct 9, 2017Updated 8 years ago
- Code for the AAAI 2012 Manifold Warping paper: http://people.cs.umass.edu/~ccarey/pubs/ManifoldWarping.pdf☆20Mar 9, 2018Updated 8 years ago
- Pangenome analysis of eukaryotes.☆21Sep 21, 2020Updated 5 years ago
- Digital Database of Microbial Phenotypes. Like an online Bergey's Manual.☆13Mar 1, 2012Updated 14 years ago
- localised duplicate detection on patterned flow cells☆10Feb 27, 2019Updated 7 years ago
- Tool for finding matches to degenerate sequence motifs in FASTA files.☆13Mar 11, 2024Updated 2 years ago
- An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al☆25Jul 15, 2024Updated last year
- Code for Shipman et al. 2017☆13Jul 12, 2017Updated 8 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated last year
- Biological Graphic tool in Python☆34May 14, 2020Updated 5 years ago
- ☆11Mar 10, 2024Updated 2 years ago
- ☆16Jun 26, 2025Updated 8 months ago
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Oct 4, 2021Updated 4 years ago
- A multiscale pangenome browser☆29Mar 6, 2026Updated 2 weeks ago
- The standard for open-source GEMs on GitHub☆21Oct 26, 2023Updated 2 years ago
- gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API se…☆14Jul 24, 2016Updated 9 years ago
- biogenerator☆13Dec 18, 2015Updated 10 years ago
- A JBrowse plugin for creating sashimi or junction style plots from RNA-seq data☆14Apr 30, 2021Updated 4 years ago
- Scalable Insets for HiGlass: a new technique for interactively exploring and navigating large numbers of annotated patterns in multiscale…☆16Dec 8, 2022Updated 3 years ago