Computational method for Comparative ReConstruction of genome-scale metabolic networks
☆22Mar 23, 2018Updated 8 years ago
Alternatives and similar repositories for CoReCo
Users that are interested in CoReCo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a Graph database and R package for omic data integration☆19Oct 28, 2016Updated 9 years ago
- Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.☆12Mar 9, 2021Updated 5 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 7 years ago
- ☆15May 7, 2019Updated 7 years ago
- Streaming sequence classification with web services ✓📌☆19Dec 8, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Docker image of JBrowse Genome Browser☆15Apr 12, 2021Updated 5 years ago
- ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.☆24Jan 28, 2025Updated last year
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- Package to create MOVIE Plots☆12Oct 31, 2019Updated 6 years ago
- Curation and analysis of metabolic models☆37Aug 8, 2023Updated 3 years ago
- A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.☆22Jul 22, 2023Updated 3 years ago
- Annotate sequences from BLAST against KEGG DB with KO numbers and summarize them in KEGG modules.☆23Dec 27, 2018Updated 7 years ago
- Pipeline for Reproducible and Scalable Integration of Metagenomic and Metatranscriptomic Data☆19Jun 10, 2026Updated 2 months ago
- Pangenome analysis of eukaryotes.☆21Sep 21, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Gene Family Annotation Workflow☆12Mar 26, 2024Updated 2 years ago
- The Microbiome Interpretable Temporal Rule Engine☆46May 26, 2021Updated 5 years ago
- 16S rRNA database☆13Nov 29, 2018Updated 7 years ago
- ☆16Jun 26, 2025Updated last year
- A flexible python program for generating figures from regions of the genome.☆13Apr 6, 2019Updated 7 years ago
- Profiler for metagenomics based on NGLess☆14Feb 22, 2024Updated 2 years ago
- ☆19Oct 9, 2017Updated 8 years ago
- Code for the AAAI 2012 Manifold Warping paper: http://people.cs.umass.edu/~ccarey/pubs/ManifoldWarping.pdf☆20Mar 9, 2018Updated 8 years ago
- Train word2vec on Pubmed data, compare 2 GO terms, compare 2 genes.☆12Apr 7, 2017Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A server for maintaining high-throughput sequencing QC data☆13Aug 5, 2025Updated last year
- localised duplicate detection on patterned flow cells☆10Feb 27, 2019Updated 7 years ago
- Code for Shipman et al. 2017☆13Jul 12, 2017Updated 9 years ago
- An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al☆26Jul 15, 2024Updated 2 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated 2 years ago
- Tool for finding matches to degenerate sequence motifs in FASTA files.☆13Mar 11, 2024Updated 2 years ago
- Biological Graphic tool in Python☆34May 14, 2020Updated 6 years ago
- 代谢网络模型构建和使用实操☆33Mar 18, 2023Updated 3 years ago
- ☆11Mar 10, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Integrative visualization of multiple omic datasets onto KEGG pathways.☆11Oct 4, 2021Updated 4 years ago
- Genomic Assemblies Merger for NGS☆26Nov 10, 2023Updated 2 years ago
- Compute sunrise and sunset times from geographical location, and reverse function☆11Sep 14, 2022Updated 3 years ago
- The standard for open-source GEMs on GitHub☆22Aug 17, 2026Updated last week
- Digital Database of Microbial Phenotypes. Like an online Bergey's Manual.☆14Mar 1, 2012Updated 14 years ago
- biogenerator☆13Dec 18, 2015Updated 10 years ago
- gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API se…☆14Jul 24, 2016Updated 10 years ago