biosustain / goodbye-genbank
A Python package for Biopython that gives feature annotations from GenBank records a new and better life
☆14Updated 8 years ago
Alternatives and similar repositories for goodbye-genbank:
Users that are interested in goodbye-genbank are comparing it to the libraries listed below
- http://www.combio.pl/alfree☆22Updated 2 years ago
- Bacterial Annotation by Learned Representation of Genes☆54Updated 4 years ago
- Malleable All-seeing Journal Of Research Artifacts☆36Updated last year
- annotation pipeline for microbial genomes and metagenomes☆18Updated 6 years ago
- Find common blocks and differences between DNA sequences☆40Updated 2 years ago
- Protein Alignment and Detection Interface☆61Updated 9 months ago
- Convert genbank files to a swath of other formats☆14Updated last year
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆35Updated 4 months ago
- Find Unique genomic Regions☆29Updated 3 weeks ago
- Biological Graphic tool in Python☆34Updated 4 years ago
- blast, shmlast☆21Updated 4 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆25Updated last year
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Create and maintain phylogenetic "reference packages" of biological sequences.☆22Updated 4 months ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated last month
- Interactive phylogenetic tree viewer/editor☆46Updated last year
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆38Updated 2 years ago
- ☆19Updated 7 years ago
- a Contig Alignment Tool for Pairwise Assembly Comparison☆13Updated 5 years ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆43Updated 2 months ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆30Updated last year
- Get, parse, and extract information from the SRA metadata files☆38Updated 2 years ago
- Annotate sequences from BLAST against KEGG DB with KO numbers and summarize them in KEGG modules.☆23Updated 6 years ago
- A list of weak Bacterial assemblies in GenBank☆18Updated 7 years ago
- Interactive, web-based BLAST results visualization tool. Accessible at https://kablammo.wasmuthlab.org.☆66Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- ☆13Updated 6 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆31Updated 3 years ago
- PaperBLAST: find papers about a protein or its homologs☆38Updated last week
- CGView.js creates interactive circular and linear genome maps.☆30Updated 3 months ago