Alternatives and similar repositories for screed:

Users that are interested in screed are comparing it to the libraries listed below

• Victorian-Bioinformatics-Consortium / nesoni
  High throughput sequencing analysis tools
  ☆30Updated 2 years ago
• nilesh-tawari / ChronQC
  Manuscript describing ChronQC is now available online in Bioinformatics
  ☆17Updated 5 years ago
• EdinburghGenomics / well_duplicates
  localised duplicate detection on patterned flow cells
  ☆10Updated 5 years ago
• mjsull / HapFlow
  Visualise interstrain recombination from environmental samples.
  ☆26Updated 5 years ago
• galaxyproject / cargo-port
  cache packages permanently
  ☆13Updated 6 months ago
• bcbio / bcbio.variation.recall
  Parallel merging, squaring off and ensemble calling for genomic variants
  ☆20Updated 5 years ago
• smdabdoub / phylotoast
  Tools for phylogenetic data analysis including visualization and cluster-computing support.
  ☆14Updated 3 years ago
• danmaclean / gee_fu
  An extensible Ruby on Rails web-service application and database for visualising HTGS data
  ☆18Updated 10 years ago
• lindenb / verticalize
  Simple tool to verticalize text delimited files.
  ☆36Updated 8 months ago
• sjackman / docker-bio
  Docker images of bioinformatics software
  ☆21Updated 7 years ago
• peterjc / picobio
  Miscellaneous Bioinformatics scripts etc mostly in Python
  ☆45Updated last week
• enasequence / cramtools
  CRAM format specification and java API for read data.
  ☆58Updated 6 years ago
• seandavi / SRAdb
  Git mirror of Bioconductor SRAdb package
  ☆21Updated 6 years ago
• vsbuffalo / scythe
  A 3'-end adapter contaminant trimmer
  ☆92Updated 6 years ago
• tseemann / homebrew-bioinformatics-linux
  Homebrew formulae for bioinformatics software only available for Linux
  ☆27Updated 5 years ago
• indraniel / fqgrep
  An approximate sequence pattern matcher for FASTQ/FASTA files.
  ☆30Updated 8 years ago
• sanger-pathogens / gff3toembl
  Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
  ☆29Updated 6 years ago
• dib-lab / screed
  a simple read-only sequence database, designed for short reads
  ☆64Updated 11 months ago
• fls-bioinformatics-core / galaxy-tools
  FLS Galaxy tools and tool-wrappers for in-house and third-party bioinformatic applications.
  ☆14Updated 9 months ago
• MatthewRalston / kmerdb
  Python bioinformatics CLI for k-mer counts and de Bruijn graphs
  ☆12Updated this week
• biocore / redbiom
  Sample search by metadata and features
  ☆45Updated last year
• iqbal-lab / cortex
  reference free variant assembly
  ☆32Updated last year
• rjpbonnal / bioruby-samtools
  Porting of samtools-ruby to BioRuby. Binder of samtools for ruby, on the top of FFI -from original project-
  ☆33Updated 5 years ago
• dkoslicki / MetaPalette
  Metagenomic profiling and phylogenetic distances via common kmers
  ☆42Updated 3 years ago
• jasperlinthorst / reveal
  Graph based multi genome aligner
  ☆46Updated 3 years ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆85Updated 3 years ago
• refweak / refweak
  A list of weak Bacterial assemblies in GenBank
  ☆18Updated 7 years ago
• RKMlab / perf
  PERF is an Exhaustive Repeat Finder
  ☆32Updated 3 years ago
• bendmorris / taxiphy
  Common repository for scripts to generate trees from taxonomies. Currently includes ITIS, NCBI, and GBIF.
  ☆16Updated 9 years ago