alejandrogzi / bed2gtfLinks
high-performance BED-to-GTF converter written in Rust
☆15Updated 11 months ago
Alternatives and similar repositories for bed2gtf
Users that are interested in bed2gtf are comparing it to the libraries listed below
Sorting:
- ☆19Updated last year
- Frequently used commands in Bioinformatics☆21Updated 2 weeks ago
- Readme☆10Updated 5 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 6 months ago
- All kinds of NGS analysis pipeline☆12Updated 6 years ago
- ☆20Updated 3 years ago
- ☆14Updated 2 years ago
- ☆18Updated last year
- RNA-seq analysis scripts☆15Updated 3 months ago
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Updated 2 years ago
- a lexicographically-based GTF/GFF sorter☆36Updated 5 months ago
- ☆22Updated 2 months ago
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆21Updated 3 weeks ago
- Nextflow pipeline for BWA, BWA2 and STAR alignments☆12Updated last year
- ☆27Updated 3 years ago
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆19Updated 4 years ago
- toolkit to process gtf files☆17Updated 3 years ago
- GCEN: an easy-to-use toolkit for Gene Co-Expression Network analysis and lncRNAs annotation☆21Updated 3 years ago
- Direct RNA publication scripts☆11Updated 8 years ago
- General Use Scripts and Helper functions☆16Updated 7 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Updated 2 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆27Updated 2 years ago
- ☆38Updated 2 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated 7 months ago
- lncHOME (lncRNA Homology Explorer), a computational pipeline that identifies a unique coPARSE-lncRNA class with conserved genomic locatio…☆13Updated last year
- ☆10Updated 4 years ago
- ☆12Updated 4 years ago
- ERVcaller is a tool designed to accurately detect and genotype non-reference unfixed endogenous retroviruses (ERVs) and other transposabl…☆13Updated last year
- Automated Rice Variant calling workflow for HPC, Cloud and Desktop systems.☆13Updated last year
- My R scripts, primarily R plotting scripts + some genomics software including 16S rRNA metataxnomics and RNAseq☆12Updated 2 years ago