Alternatives and similar repositories for phylotoast:

Users that are interested in phylotoast are comparing it to the libraries listed below

• borenstein-lab / fishtaco
  FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…
  ☆24Updated 3 years ago
• camillescott / shmlast
  blast, shmlast
  ☆21Updated 4 years ago
• tseemann / mokka
  Annotate your metagenome assemblies
  ☆11Updated 6 years ago
• lmward / MetaPOAP
  the Metagenomic test for Presence Or Absence of Pathways
  ☆13Updated 5 years ago
• snayfach / IGGsearch
  Metagenomic species profiling with enhanced coverage of the human gut microbiome
  ☆25Updated 8 months ago
• Gibbons-Lab / medi
  Metagenomic Estimation of Dietary Intake and Content.
  ☆15Updated this week
• CDCgov / seqsender
  Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
  ☆34Updated 2 weeks ago
• hallamlab / metapathways2
  MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds
  ☆33Updated 9 years ago
• bcthomas / pullseq
  Utility program for extracting sequences from a fasta/fastq file
  ☆36Updated last month
• edgraham / BinSanity
  Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation
  ☆29Updated 3 years ago
• biocore / wol
  Reference Phylogeny for Bacterial and Archaeal Genomes
  ☆25Updated last year
• iqbal-lab / cortex
  reference free variant assembly
  ☆32Updated last year
• combogenomics / CONTIGuator
  Bacterial genomes finishing tool for structural insights on draft genomes
  ☆24Updated last year
• merenlab / reads-for-assembly
  Simulate metagenomic short reads from one or more populations.
  ☆26Updated this week
• tseemann / ekidna
  Assembly based core genome SNP alignments for bacteria
  ☆25Updated 5 years ago
• Microbiology / ccontigs
  Detect contigs of complete circular genomes
  ☆22Updated 5 years ago
• LANL-Bioinformatics / GOTTCHA
  Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:
  ☆23Updated 6 years ago
• TGenNorth / NASP
  Northern Arizona SNP Pipeline
  ☆19Updated 3 months ago
• ncbi-gpipe / pgap
  (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:
  ☆15Updated 6 years ago
• mthon / mirlo
  A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.
  ☆13Updated 5 years ago
• jfass / apc
  (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join
  ☆11Updated 3 years ago
• dkoslicki / MetaPalette
  Metagenomic profiling and phylogenetic distances via common kmers
  ☆42Updated 3 years ago
• sanger-pathogens / gff3toembl
  Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
  ☆29Updated 6 years ago
• hallamlab / LCAStar
  Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree
  ☆14Updated 8 months ago
• taxprofiler / taxpasta
  TAXnomic Profile Aggregation and STAndardisation
  ☆34Updated 3 months ago
• aweimann / traitar
  ☆22Updated last year
• tseemann / scapper
  Whole genome core alignments from multiple draft genomes
  ☆12Updated 8 years ago
• rpetit3 / fastq-scan
  Output FASTQ summary statistics in JSON format
  ☆29Updated 2 years ago
• AlexanderLabWHOI / EUKulele
  Automatic eukaryotic taxonomic classification
  ☆28Updated 4 months ago
• zheminzhou / SPARSE
  Strain Prediction and Analysis with Representative SEquence
  ☆18Updated last month