smdabdoub / phylotoastLinks
Tools for phylogenetic data analysis including visualization and cluster-computing support.
☆14Updated 3 years ago
Alternatives and similar repositories for phylotoast
Users that are interested in phylotoast are comparing it to the libraries listed below
Sorting:
- blast, shmlast☆22Updated 4 years ago
- RNAsik - more than just a pipeline☆13Updated last year
- ☆19Updated 8 years ago
- FishTaco (Functional Shifts Taxonomic Contributors) is a metagenomic computational framework that aims to identify the driver taxa of mic…☆24Updated 4 years ago
- the Metagenomic test for Presence Or Absence of Pathways☆13Updated 6 years ago
- A message queue for genomic surveillance☆20Updated 3 years ago
- Explore and analyze biological sequence data☆16Updated 11 months ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- Align short reads against viral genomes in protein space☆10Updated 7 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 6 months ago
- Annotate your metagenome assemblies☆11Updated 6 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16Updated last year
- ☆11Updated 4 years ago
- Reference Phylogeny for Bacterial and Archaeal Genomes☆25Updated 2 years ago
- Accurate read-based metagenome characterization using a hierarchical suite of unique signatures. Please visit our homepage:☆23Updated 6 years ago
- A pipeline for extracting SSU rRNA gene from wgs data and applying them for further diversity analysis☆10Updated 9 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Updated 6 years ago
- Perform microbiome-wide association studies with a variety of models☆18Updated 8 years ago
- Analysis of RNAseq data from (host-associated) microbial mixtures☆12Updated 5 years ago
- Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.☆27Updated 3 years ago
- ☆23Updated 5 years ago
- Confirming specific taxonomic groups within your samples.☆19Updated 4 years ago
- variant discovery and annotation using GATK and Ensembl☆17Updated 12 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Updated 7 years ago
- Metagenomic species profiling with enhanced coverage of the human gut microbiome☆25Updated last year
- Interactive tools for metagenome visualization and binning in R☆28Updated 7 years ago
- The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)☆17Updated 6 years ago
- Metagenomics-focused BAM file manipulation☆16Updated 6 years ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆35Updated last week