FemeniasM / ExplorATEproject
R package to explore active transposable elements with RNA-seq data
☆20Updated 2 years ago
Alternatives and similar repositories for ExplorATEproject:
Users that are interested in ExplorATEproject are comparing it to the libraries listed below
- A pipeline for identifying conserved topologically associating domain boundaries among multiple species.☆14Updated 8 months ago
- “When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau☆19Updated 4 years ago
- ☆15Updated 2 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆23Updated 9 months ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆22Updated 4 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- ☆17Updated 2 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆24Updated 2 weeks ago
- Detecting NUMTs from WGS☆11Updated last year
- A gene fusion caller for long-read transcriptome sequencing data.☆18Updated 11 months ago
- Invertory of TE-gene isoforms☆9Updated last year
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆31Updated 6 years ago
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆12Updated 2 years ago
- Split-read pipeline for the identification of non-reference TE insertions with TSDs☆25Updated 4 years ago
- Updated and optimized fork of BSMAP☆22Updated 4 years ago
- Snakemake pipeline to analyze transposable element 'omics data.☆18Updated last week
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated this week
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆20Updated 4 years ago
- ☆23Updated 2 years ago
- Enabling differential allele-specific analysis☆11Updated 3 months ago
- ☆24Updated last year
- The cattle Genotype-Tissue Expression atlas v1☆23Updated 2 years ago
- A pipeline for isoseq☆23Updated 6 years ago
- ☆18Updated 8 months ago
- ☆33Updated last year
- An accurate repeat detection from Nanopore data using deep learning and image techniques☆22Updated 2 years ago
- A stand-alone application for constructing websites for visualizing and browsing synteny blocks☆18Updated 4 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆25Updated last month