R package to explore active transposable elements with RNA-seq data
☆21Nov 25, 2022Updated 3 years ago
Alternatives and similar repositories for ExplorATEproject
Users that are interested in ExplorATEproject are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A developed pipeline for expressed endogenous retrovirus identification.☆17Oct 9, 2024Updated last year
- Enabling differential allele-specific analysis☆11Dec 28, 2024Updated last year
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- A software package for local ancestry inference and haplotype phasing☆45Apr 20, 2023Updated 3 years ago
- Tool for finding matches to degenerate sequence motifs in FASTA files.☆13Mar 11, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆287May 11, 2026Updated 2 months ago
- Tool comparison for detecting differentially expressed individual transposable elements☆12Jan 7, 2022Updated 4 years ago
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 2 years ago
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Jul 9, 2026Updated 2 weeks ago
- TE tools for TE RNASeq and smallRNASeq analysis with galaxy☆12Apr 2, 2021Updated 5 years ago
- ☆12Feb 16, 2025Updated last year
- TransposonUltimate - a holistic set of tools for transposon identification☆86Mar 4, 2022Updated 4 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆53Apr 1, 2026Updated 3 months ago
- Here we present a method to plot the outputs of RFMIX version 2☆32Jul 1, 2026Updated 3 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- Transposable Elements MOvement detection using LOng reads☆25Jul 16, 2026Updated last week
- A set of bioconda packages for transposon annotations. During my masterthesis I downloaded lots of these tools and I want to make it easi…☆14Mar 4, 2022Updated 4 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Mar 29, 2023Updated 3 years ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆37Apr 20, 2026Updated 3 months ago
- ☆17Jul 19, 2024Updated 2 years ago
- ☆16Apr 25, 2019Updated 7 years ago
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆13Apr 21, 2026Updated 3 months ago
- Tools for DLO HiC data analyze☆16Oct 31, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated last year
- ☆17Jul 13, 2024Updated 2 years ago
- Homepage for YuLab-SMU☆14Updated this week
- ☆10Aug 21, 2025Updated 11 months ago
- A Generalizable Model for 3D Chromosome Reconstruction Using Graph Convolutional Neural Networks☆18Sep 9, 2021Updated 4 years ago
- ☆23Jun 5, 2021Updated 5 years ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 6 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Jul 31, 2023Updated 2 years ago
- Accurate haplotype construction and detection of selection signatures enabled by 889 high quality pig genome sequences☆14May 11, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- KmerGO is a user-friendly tool to identify the group-specific sequences on two groups or trait-associated sequences of high throughput se…☆13Mar 6, 2023Updated 3 years ago
- GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data☆12Feb 22, 2024Updated 2 years ago
- BOSTIn is a new, user-friendly phylogenetic artifact identification package.☆12Jul 11, 2026Updated last week
- Probabilistic Inference of Molecular Evolution☆10Sep 6, 2021Updated 4 years ago
- Domain based annotation of transposable elements☆23Updated this week
- Paired Insertion Counting for snATAC-seq data☆19Mar 15, 2026Updated 4 months ago
- high-performance BED-to-GTF converter written in Rust☆21Jun 24, 2026Updated last month