OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.
☆25Dec 1, 2022Updated 3 years ago
Alternatives and similar repositories for orthofiller
Users that are interested in orthofiller are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- defusion☆14Aug 24, 2021Updated 5 years ago
- Just Annotate My Genome☆19May 21, 2026Updated 5 months ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 5 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Oct 14, 2016Updated 10 years ago
- GeneValidator: Identify problems with predicted genes☆50Mar 1, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A comparative genome scaffolding tool☆16Oct 6, 2018Updated 8 years ago
- Parallel implementation of OrthoMCL☆21Aug 26, 2022Updated 4 years ago
- Very very long reads, indeed☆13Apr 30, 2017Updated 9 years ago
- JBrowse 1.x Plugin Registry☆14Sep 10, 2023Updated 3 years ago
- Guided synteny alignment between duplicated genomes (within specified quota constraint)☆60Sep 5, 2017Updated 9 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Mar 13, 2019Updated 7 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Mar 3, 2020Updated 6 years ago
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 11 years ago
- Conditional Reciprocal Best Blast☆44Mar 22, 2017Updated 9 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Scaffolding with RNA-seq read alignment☆21Jul 10, 2018Updated 8 years ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Sep 23, 2017Updated 9 years ago
- Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…☆18Nov 18, 2024Updated last year
- TULIP - The Uncorrected Long read Itegration Pipeline☆27Jan 15, 2018Updated 8 years ago
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Mar 22, 2021Updated 5 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆69Mar 5, 2018Updated 8 years ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆127Apr 7, 2021Updated 5 years ago
- A tool to analyze synteny at the protein level.☆14Mar 28, 2018Updated 8 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆80Aug 30, 2016Updated 10 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A universal genomic coordinate translator for comparative genomics☆12Jul 6, 2017Updated 9 years ago
- Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…☆27Oct 23, 2026Updated last week
- Taxon-aware analysis of clustered protein sequences☆31Jul 1, 2024Updated 2 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆68Mar 22, 2021Updated 5 years ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆28Updated this week
- source code for HpcGridRunner☆17Aug 2, 2021Updated 5 years ago
- ☆29Jul 18, 2026Updated 3 months ago
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 6 years ago
- Tool to estimate deltas for sequence sets and answer questions about relative contribution☆21Mar 25, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A dotplot application for DNA/RNA sequence☆12Nov 28, 2022Updated 3 years ago
- Hagfish - assess an assembly through creative use of coverage plots☆37Aug 9, 2012Updated 14 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 11 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- ☆26Oct 31, 2019Updated 7 years ago
- Merge transcriptome assemblies☆30Oct 6, 2016Updated 10 years ago
- Subset of fast5 files contained in a fastq, BAM, or SAM file.☆12Mar 29, 2023Updated 3 years ago