mpdunne / orthofillerLinks
OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.
☆23Updated 2 years ago
Alternatives and similar repositories for orthofiller
Users that are interested in orthofiller are comparing it to the libraries listed below
Sorting:
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- ☆26Updated 4 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- use paired-end transcriptome reads to scaffold genomes☆11Updated 6 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Just Annotate My Genome☆19Updated 9 months ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- genomic alignment similarity search tool☆18Updated last month
- Toolkit for preparing genomes for submission to NCBI☆30Updated 3 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- ☆28Updated 2 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- Scaffolding with RNA-seq read alignment☆20Updated 6 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 9 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 5 years ago
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- Visualising discordant reads☆15Updated 9 years ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆45Updated 2 years ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Parallel implementation of OrthoMCL☆21Updated 2 years ago
- Tool for visualising assemblies.☆17Updated 9 years ago
- ☆26Updated 5 years ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- ☆25Updated 9 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago