quinlan-lab / ccr
Building the constrained coding regions (CCR) model
☆16Updated 6 years ago
Alternatives and similar repositories for ccr:
Users that are interested in ccr are comparing it to the libraries listed below
- Bedfile perturbation tool☆17Updated last year
- v2.x of the microassembly based somatic variant caller☆20Updated last week
- pathoscore evaluates variant pathogenicity tools and scores.☆21Updated 3 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- detection of mutations causing splicing change☆13Updated 2 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 11 months ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- ☆22Updated last year
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- Chromatin segmentation in R☆19Updated 7 years ago
- ☆21Updated 3 weeks ago
- Comprehensive Human Expressed SequenceS☆16Updated 8 months ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated last year
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 7 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 8 months ago
- MSKCC Reis-Filho Lab pipeline thingy☆16Updated 8 months ago
- ☆12Updated last year
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- WES HLA Typing based on multiple alternative tools☆15Updated 4 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆22Updated 6 years ago
- ☆12Updated 3 months ago
- Benchmarks for RNA-seq quantification pipelines☆8Updated 5 years ago
- Aggregation and analyses of rare CNVs across diseases☆14Updated 2 years ago
- ☆12Updated 11 months ago